Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2112 ATGGATTTCTGGCCAGAGTTCCTCGCAAGCACTTGGGGTAGAGAGTTTGTCGCCGGTGGATTTGGTGGCGTCGCCGGCATAATCGCAGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCAATCAATTTCTGGTTCTGCCTTGAAAATCTTCCGCAATATCATTGCCAACGATGGCCCTGCTGGTCTTTATCGAGGCATGGCCGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCATTCTTTCTCGGGCATTCAACTCCTCCCAATCCAACGGTGACCCTCCTAGCTATAAGGCCGTGGCTTTTGGAGGAATTGGCACCGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTGGTGAAGATCCGCCTGCAATTGCAAAGTTCACGACAACAATTGATTTCTTCTTCTCATAGAGGCCCTGTGAGCGTCGCCAAAAGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGCATCTACTTTTGGACATATGAGTGCATGAGAGAGCAGTTCCATCCTGGCTGCCGGAAGACCGGTCAGGAGAGCGTTAGCACAATGCTGGTCGCCGGAGGGCTAGCCGGAGTTGCGAGCTGGGTTTTCTGTTATCCCTTGGATGTGTTGAAGACAAGAATTCAGGGTCAGACACAAAGTTCATCTCGAAAGTACAATGGAATTGTTGATTGCCTAAGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTTGCTAGAGCATTTGTGGTTAATGGGGCCATTTTTGCTGCTTATGAGATAACTTTGAGGTGTTTGTTTCGCAATGGAAGCAATCAGACAAAGAAATGA 915 50.49 MDFWPEFLASTWGREFVAGGFGGVAGIIAGYPLDTLRIRQQQSISGSALKIFRNIIANDGPAGLYRGMAAPLASVTFQNAAVFQIYAILSRAFNSSQSNGDPPSYKAVAFGGIGTGALQSFILSPVELVKIRLQLQSSRQQLISSSHRGPVSVAKSICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYECMREQFHPGCRKTGQESVSTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTQSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEITLRCLFRNGSNQTKK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48108678 48110512 + Maker00013672 Lcy3g2112 629304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2112 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Lcy3g2112 304 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 294 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Lcy3g2112 304 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Lcy3g2112 304 PRINTS Mitochondrial carrier protein signature 167 185 IPR002067 GO:0055085(InterPro)
Lcy3g2112 304 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085(InterPro)
Lcy3g2112 304 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Lcy3g2112 304 PRINTS Mitochondrial carrier protein signature 214 236 IPR002067 GO:0055085(InterPro)
Lcy3g2112 304 FunFam Mitochondrial arginine transporter BAC2 11 304 - -
Lcy3g2112 304 Gene3D Mitochondrial carrier domain 14 303 IPR023395 -
Lcy3g2112 304 Pfam Mitochondrial carrier protein 109 195 IPR018108 -
Lcy3g2112 304 Pfam Mitochondrial carrier protein 205 296 IPR018108 -
Lcy3g2112 304 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Lcy3g2112 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 205 293 IPR018108 -
Lcy3g2112 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 194 IPR018108 -
Lcy3g2112 304 SUPERFAMILY Mitochondrial carrier 13 288 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2112 Lcy-Chr3:48108678 Lcy7g0917 Lcy-Chr7:9259311 3.67E-07 dispersed
Lcy1g1585 Lcy-Chr1:15900007 Lcy3g2112 Lcy-Chr3:48108678 2.73E-22 transposed
Lcy5g2467 Lcy-Chr5:47412620 Lcy3g2112 Lcy-Chr3:48108678 1.52E-11 transposed
Lcy8g1714 Lcy-Chr8:43675023 Lcy3g2112 Lcy-Chr3:48108678 6.27E-14 transposed
Lcy12g0645 Lcy-Chr12:7960818 Lcy3g2112 Lcy-Chr3:48108678 4.90E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2112 K15109 - csv:101222165 530.791