Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2124 ATGGCCGTTGTCATGTCCGACAACCACCCCCCTCGCCGAGTCAAGAATGCTGGGGTTTTTGGGAATGCGGCGGCGGCGGCGGCTGCGACGGTGGACGTGGAGGTGGACGCGCCGGCGAGGAGAGACGACAGCTGCAGTGACAACTCCGAGCAGGCGGGATCCAGGTCGGCGGAGGATTTGGGGGCCGACCCTGATGATGAAGATGAAGATAAGTTACGGGGGAATAGAAAGAAGAGGAAGAATCGTCATACTTCAGACCAAATCAGAGAAATGGAGATGTTGTTTAAAGAGTCACCTCATCCAGATGAGAAACAGCGGCAGCAACTCAGTGAGAAACTTGGGCTTTCTTCTAAGCAAATCAAGTTCTGGTTTCAGAATCGTAGAACCCAAATCAAGGCCATTCACGAGCGTCATGAAAACGCTTTGTTGAAAGGAGAAATGGAGAAATTGCGAGAGGAAAACCTAGCGATGAGGGAAATGATGAACAAATCTTCTTGCCCTAAATGTGGCTATTCAGCTAATTCTACCTCCATTTCTATGGATTCCATTTTCACCTGTTCTGACCAACAACTAATAACTAAAATCACTCGACTCGAAGCTGAGGTCGAACGATTGCGAACGGCTCTGGAAATATACGCTCCAGCAGGGACATCAACGTCGCGTTCGGGGGAGAACGACGAGGGGATGGAGAGGAGGAGGAATTTGGGGAAATCGAAGACGATTTTCGGACTGGAGAAAGCCAGGATTATGGAGATAGCGAAGCGAGCGATAGAGGAGGTGGTGAAAATGGCGGATTCCGGTGAGCCGCTTTGGGTTCGAAGCGTCGAAACAGGACGCGAACTACTGAATTACGATGTGTACGTGAAGGAATTCGCCGGCGAAAAAGAGCAGCCGAAGAGAGAAATCGAAGCGTCGAGGGAATCTGGCGTGGTGTTCGTCGATCTTCATCGATTGGTTCAGAGCTTGATGGATGTGGTTCAATGGAAGGAAATGTTTCCATCGATAATCTCGAAGGCGTCGACAATGGAGGTCGTCTGCCATGGCGACGGCACCACCAGGAATGGCGCCGTTCAACTGATGTTTGCAGAGCTCCAAATGCTCACCCCCACCCTCCCCCCAAGAGAGGTCAATTTCATTCGAAGTTGTCTGCAACTAAGCCCCGAAAAGTGGGTCGTCGCTGATGTCTCCATCGACAAAGTCGAAGATAATATTGACTCATCCTCCTCCCTTTGCAAGAAACGTCCCTCTGGTTGTATCATCGAGGACACATCTAACGGCCATTGTAAGGTCACATGGGTGGAGCATTGGGAATGCCAGAAGATCGGACTTCGAACGATATACCGAAACATCGTCAACAGCGGTTTGATATTCGGAGCGAGGCATTGGATGGCGACGCTGCAAATCCATTGTGAGTGGCAGGTTTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCCACTGGAATCACCACTCTTGGTGGAAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGACATCTAGTTTTTATCAAGCCATTGGTGCTTCCAGCAGCCATACATGGACCAAGGTCCAGAGCAAAACAGGTGAAAGCATAAGGGTTGCTTCAAGGAAGAACTTGAAAGACCCACGAGAACCTCTTGGTTTGATCTTGTGTGCAGTTGCTTCTGTCTGGCTTCCTGTTTCCCCTAAGGTCTTGTTCGAGTTCTTGATCGACGAAGCTCGACGAATCGAGTGGGATGTGATGTTAAATGGCGGTTCAGCTGAAACATTAGCAAACTTTGCCAAAGGACAGAATCGAGGCAATGTTGTTACTATCCAAGCAACAAAATCAGATGAAACCAACACATGGATTCTTCAAGATAGTTTAACAAATGAATATGAATCAACGGTGGTCTATGCTCAAGTTGACATTACGAGTATGCAATCTGTGATGACGGGGTGCGACCCAGGCAGCATCACGATGTTACCAACCGGCTTCTCGATCCTCCCAGATGGGCATCCGTCTAGGCCTGTGGTTATCAGTTCTAGCAAAGACAAGGCAACAGAAGAAAGCTCTTTGCTAACAATAGCATCCCAAATCTTAATTAGTTCATCTCCCACAGCTGAAATGACGTCGCAGTCAATGGAGTATGTTAAAAATGTTATATCACATACGTTAAAGAATATTAAAGAGAAACTGCAAGATGATGATGATGATTGA 2202 48.09 MAVVMSDNHPPRRVKNAGVFGNAAAAAAATVDVEVDAPARRDDSCSDNSEQAGSRSAEDLGADPDDEDEDKLRGNRKKRKNRHTSDQIREMEMLFKESPHPDEKQRQQLSEKLGLSSKQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENLAMREMMNKSSCPKCGYSANSTSISMDSIFTCSDQQLITKITRLEAEVERLRTALEIYAPAGTSTSRSGENDEGMERRRNLGKSKTIFGLEKARIMEIAKRAIEEVVKMADSGEPLWVRSVETGRELLNYDVYVKEFAGEKEQPKREIEASRESGVVFVDLHRLVQSLMDVVQWKEMFPSIISKASTMEVVCHGDGTTRNGAVQLMFAELQMLTPTLPPREVNFIRSCLQLSPEKWVVADVSIDKVEDNIDSSSSLCKKRPSGCIIEDTSNGHCKVTWVEHWECQKIGLRTIYRNIVNSGLIFGARHWMATLQIHCEWQVFFMATNVPMKDSTGITTLGGRKSVLRLAQRMTSSFYQAIGASSSHTWTKVQSKTGESIRVASRKNLKDPREPLGLILCAVASVWLPVSPKVLFEFLIDEARRIEWDVMLNGGSAETLANFAKGQNRGNVVTIQATKSDETNTWILQDSLTNEYESTVVYAQVDITSMQSVMTGCDPGSITMLPTGFSILPDGHPSRPVVISSSKDKATEESSLLTIASQILISSSPTAEMTSQSMEYVKNVISHTLKNIKEKLQDDDDD 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48181984 48187729 - Maker00015130 Lcy3g2124 629316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2124 733 Pfam START domain 251 471 IPR002913 GO:0008289(InterPro)
Lcy3g2124 733 SUPERFAMILY Bet v1-like 495 694 - -
Lcy3g2124 733 SUPERFAMILY Bet v1-like 244 471 - -
Lcy3g2124 733 FunFam Homeobox-leucine zipper protein GLABRA 2 251 471 - -
Lcy3g2124 733 Pfam Homeodomain 77 132 IPR001356 GO:0003677(InterPro)
Lcy3g2124 733 Coils Coil 133 160 - -
Lcy3g2124 733 CDD START_ArGLABRA2_like 246 471 - -
Lcy3g2124 733 FunFam Homeobox-leucine zipper protein HDG1 63 150 - -
Lcy3g2124 733 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy3g2124 733 MobiDBLite consensus disorder prediction 34 88 - -
Lcy3g2124 733 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677(InterPro)
Lcy3g2124 733 Gene3D - 64 145 - -
Lcy3g2124 733 CDD homeodomain 77 132 IPR001356 GO:0003677(InterPro)
Lcy3g2124 733 SUPERFAMILY Homeodomain-like 67 133 IPR009057 -
Lcy3g2124 733 Coils Coil 188 208 - -
Lcy3g2124 733 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 728 IPR042160 -
Lcy3g2124 733 SMART START_1 251 472 IPR002913 GO:0008289(InterPro)
Lcy3g2124 733 Gene3D - 249 470 IPR023393 -
Lcy3g2124 733 ProSiteProfiles START domain profile. 242 475 IPR002913 GO:0008289(InterPro)
Lcy3g2124 733 SMART HOX_1 76 138 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2124 Lcy-Chr3:48181984 Lcy4g0564 Lcy-Chr4:6910018 1.32E-151 dispersed
Lcy12g0654 Lcy-Chr12:8024194 Lcy3g2124 Lcy-Chr3:48181984 2.09E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19899 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2124 K09338 - csv:101218545 1111.67