Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2133 ATGGCCTGGTTCACCATTGGAAGCTTTCAAGATTCCTTCAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTTGGCTCCGCCATTGCCTTCGATAAAGTAACATCGTCTGCAGCTCTAGATGCGGCGGGGCTAGTTGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTGTCGGTCGGAGCCAATATCTCCGGTGGCCACGTGAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGGGATCAAATCAGCCTAATTACGACCATATTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACCGGCGGCCTGGCAGTTCCGGTCCACAGCTTGGCGGCCGGCGTTGGGGCGGCGGAAGGAGTTGTGATGGAGATTGTAATCACTTTCGGTCTGGTTTACACTGTCTATGCGACGGCGGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATTGCCATCGGTTTAATCGTCGGAGCAAACATCTTGGCCGCCGGACCGTTTTCCGGCGGCTCGATGAACCCGGCCCGGTCGTTTGGACCGGCGGTGGTCAGTGGGAACTTTCACGACAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCTTATGGGCCCAGCCCAATTCCAAACGATTTCTGA 747 55.29 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAFDKVTSSAALDAAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSLAAGVGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48287893 48290109 + Maker00013762 Lcy3g2133 629325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2133 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lcy3g2133 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Lcy3g2133 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lcy3g2133 248 FunFam Probable aquaporin TIP1-1 2 247 - -
Lcy3g2133 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2133 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1316 Lcy-Chr1:12646879 Lcy3g2133 Lcy-Chr3:48287893 8.62E-97 dispersed
Lcy3g2133 Lcy-Chr3:48287893 Lcy5g0321 Lcy-Chr5:3082269 1.49E-92 dispersed
Lcy12g1352 Lcy-Chr12:30053485 Lcy3g2133 Lcy-Chr3:48287893 3.15E-64 transposed
Lcy12g1837 Lcy-Chr12:39486350 Lcy3g2133 Lcy-Chr3:48287893 2.04E-121 transposed
Lcy13g1413 Lcy-Chr13:32482233 Lcy3g2133 Lcy-Chr3:48287893 1.47E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2133 K09873 - csv:101218611 451.825