Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2138 ATGGCAAACCCAAACAATTCAAATCCCCAAAACAAAAGCATCTCATTTCCCACTACTCCAACTCCACCACTTTCTTCTTCATCTCCGTTCACCCGCCCGGTTTCCGGCGCCGGAGCGGCCCAACCAGACCGTCGTCCTTCCGGCAAAAGAACCAGAGACTGCAACAAACATCCCGTCTTCAGAGGCGTACGGAAGCGAAGCTGGGGCAAATGGGTGTCGGAAATCCGGCAGCCACGTAAGAAGTCCCGAATTTGGCTCGGCACTTTTCCCACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCGCTGAGCATCAAAGGCGACTCGGCCATCCTCAATTACCCCGAACTCGCCGAGTTTCTGCCCCGGCCGGCGTCGCTCATGCCTCACGACATTCAAGCCGCCGCCGCCAAAGCGGCGGCGATGGTCACTTCATTGCCGTCGGAGGAGGAGGAGCTGAGTGAGATCGTCGAGTTGCCGAATATAGAAGACGATTTTGGTACTGAGTCACTGAACGAGTTCAAATTGGTTACCGAGTCGTGGGAATGGTGGGAGTACGTGGCAATGCCGTTGGCGGCGGAATTCGGCGGCGGTTATTTTTCGGACCAGACAGCGGCGGACGACAGTTTTTTCCCGACCAGCTTTTACGGTGCTCATTGGGATTAA 669 56.95 MANPNNSNPQNKSISFPTTPTPPLSSSSPFTRPVSGAGAAQPDRRPSGKRTRDCNKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDVAALSIKGDSAILNYPELAEFLPRPASLMPHDIQAAAAKAAAMVTSLPSEEEELSEIVELPNIEDDFGTESLNEFKLVTESWEWWEYVAMPLAAEFGGGYFSDQTAADDSFFPTSFYGAHWD 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48321275 48321943 + Maker00013839 Lcy3g2138 629330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2138 222 MobiDBLite consensus disorder prediction 1 21 - -
Lcy3g2138 222 MobiDBLite consensus disorder prediction 1 58 - -
Lcy3g2138 222 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677(InterPro)
Lcy3g2138 222 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2138 222 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2138 222 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2138 222 Pfam AP2 domain 58 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2138 222 CDD AP2 60 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2138 222 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2138 222 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Lcy3g2138 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 152 IPR051032 -
Lcy3g2138 222 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2103 Lcy-Chr11:44497811 Lcy3g2138 Lcy-Chr3:48321275 9.88E-39 dispersed
Lcy12g0669 Lcy-Chr12:8285372 Lcy3g2138 Lcy-Chr3:48321275 1.41E-57 dispersed
Lcy3g2138 Lcy-Chr3:48321275 Lcy6g1164 Lcy-Chr6:13456833 6.35E-41 dispersed
Lcy2g0853 Lcy-Chr2:7718615 Lcy3g2138 Lcy-Chr3:48321275 1.56E-51 wgd
Lcy3g2138 Lcy-Chr3:48321275 Lcy9g1625 Lcy-Chr9:41392249 6.82E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19901 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2138 K09286 - csv:101217361 314.309