Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2162 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTATTGGGGATGAAAAAGGAGAAAGACCCATCTGGTAATTCAAATTCAAATCCAACCGCCGTCGCCGCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAATCCGGCAGAGATCCCGGCCAGACGCCGCCGCCTGCGGCGGCGGAGGCTGCTTGGTTCAGATCATACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTCGCTGCTGCTACCGCCGCCGCCGCTGACGCTGCCGTCGCGGCTGCTCAGGCGGCGGTGGCCGTCGTCCGGCTGACCAGCCAAGGAAGAGGGTCTTTGTACATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTTAGAGCTCAAACTGCAGTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAGAATAGGTTTATCCCCGAGATTCGGCCTCGAAAATCTTCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCATCTTATGAAACTTGCATCAACTCATTGGATGAGAGTCCCAAAATTGTCGAAATCGACACCTACCGAACCCGATCGAGGTCTCGTAGATACATCTCGGCATTGTCTGAATGCGGAGGAGATGATGTACCTCTCCAAGCGATCTCTTCGCCATTGCCATGTCCGAATCGACCTCGTGTCGCTGCGCCCGATTGCCACAATGTGCTTCGAGACTTCGAATGGTGCTTGATGGGGGAAGACTGCAAGTTCCCCACAGCTCACAGCACGCCACGGCTATCGAATTCATTCGCCTCCGGCAACGTGCCAGTCACCCCGTCGAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCATACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTCTCATTGAATGAAATAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAAAATGCAGAGACCAAGTAACCAAATGCTGCAAGAAGAAGAAGAAGAAGATGAAGAAGAAGATGAAGAAACATCATATGGTTTTTGA 1257 49.72 MGKATRWLKGLLGMKKEKDPSGNSNSNPTAVAADRKEKKRWSFAKSGRDPGQTPPPAAAEAAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSSERFDETRSEFHSKRLSIASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSECGGDDVPLQAISSPLPCPNRPRVAAPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSNSFASGNVPVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVKMQRPSNQMLQEEEEEDEEEDEETSYGF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48528838 48531336 + Maker00015293 Lcy3g2162 629354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2162 418 ProSiteProfiles Zinc finger C3H1-type profile. 281 312 IPR000571 GO:0046872(InterPro)
Lcy3g2162 418 ProSiteProfiles IQ motif profile. 120 148 - -
Lcy3g2162 418 MobiDBLite consensus disorder prediction 381 397 - -
Lcy3g2162 418 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Lcy3g2162 418 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Lcy3g2162 418 Pfam Protein of unknown function (DUF4005) 312 396 IPR025064 -
Lcy3g2162 418 PANTHER IQ-DOMAIN 5-RELATED 6 394 - -
Lcy3g2162 418 MobiDBLite consensus disorder prediction 355 418 - -
Lcy3g2162 418 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Lcy3g2162 418 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Lcy3g2162 418 Gene3D - 62 145 - -
Lcy3g2162 418 ProSiteProfiles IQ motif profile. 144 171 - -
Lcy3g2162 418 MobiDBLite consensus disorder prediction 1 57 - -
Lcy3g2162 418 MobiDBLite consensus disorder prediction 401 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1577 Lcy-Chr11:39600114 Lcy3g2162 Lcy-Chr3:48528838 2.19E-24 dispersed
Lcy12g1690 Lcy-Chr12:37375438 Lcy3g2162 Lcy-Chr3:48528838 1.15E-12 dispersed
Lcy3g2162 Lcy-Chr3:48528838 Lcy6g0184 Lcy-Chr6:1676458 5.69E-09 dispersed
Lcy12g0677 Lcy-Chr12:8459747 Lcy3g2162 Lcy-Chr3:48528838 1.74E-73 wgd
Lcy2g0871 Lcy-Chr2:7948711 Lcy3g2162 Lcy-Chr3:48528838 3.49E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44