Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g2162 | ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTATTGGGGATGAAAAAGGAGAAAGACCCATCTGGTAATTCAAATTCAAATCCAACCGCCGTCGCCGCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAATCCGGCAGAGATCCCGGCCAGACGCCGCCGCCTGCGGCGGCGGAGGCTGCTTGGTTCAGATCATACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTCGCTGCTGCTACCGCCGCCGCCGCTGACGCTGCCGTCGCGGCTGCTCAGGCGGCGGTGGCCGTCGTCCGGCTGACCAGCCAAGGAAGAGGGTCTTTGTACATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTTAGAGCTCAAACTGCAGTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAGAATAGGTTTATCCCCGAGATTCGGCCTCGAAAATCTTCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCATCTTATGAAACTTGCATCAACTCATTGGATGAGAGTCCCAAAATTGTCGAAATCGACACCTACCGAACCCGATCGAGGTCTCGTAGATACATCTCGGCATTGTCTGAATGCGGAGGAGATGATGTACCTCTCCAAGCGATCTCTTCGCCATTGCCATGTCCGAATCGACCTCGTGTCGCTGCGCCCGATTGCCACAATGTGCTTCGAGACTTCGAATGGTGCTTGATGGGGGAAGACTGCAAGTTCCCCACAGCTCACAGCACGCCACGGCTATCGAATTCATTCGCCTCCGGCAACGTGCCAGTCACCCCGTCGAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCATACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTCTCATTGAATGAAATAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAAAATGCAGAGACCAAGTAACCAAATGCTGCAAGAAGAAGAAGAAGAAGATGAAGAAGAAGATGAAGAAACATCATATGGTTTTTGA | 1257 | 49.72 | MGKATRWLKGLLGMKKEKDPSGNSNSNPTAVAADRKEKKRWSFAKSGRDPGQTPPPAAAEAAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSSERFDETRSEFHSKRLSIASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSECGGDDVPLQAISSPLPCPNRPRVAAPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSNSFASGNVPVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVKMQRPSNQMLQEEEEEDEEEDEETSYGF | 418 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 48528838 | 48531336 | + | Maker00015293 | Lcy3g2162 | 629354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g2162 | 418 | ProSiteProfiles | Zinc finger C3H1-type profile. | 281 | 312 | IPR000571 | GO:0046872(InterPro) | |
| Lcy3g2162 | 418 | ProSiteProfiles | IQ motif profile. | 120 | 148 | - | - | |
| Lcy3g2162 | 418 | MobiDBLite | consensus disorder prediction | 381 | 397 | - | - | |
| Lcy3g2162 | 418 | SMART | iq_5 | 142 | 163 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g2162 | 418 | SMART | iq_5 | 119 | 141 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g2162 | 418 | Pfam | Protein of unknown function (DUF4005) | 312 | 396 | IPR025064 | - | |
| Lcy3g2162 | 418 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 394 | - | - | |
| Lcy3g2162 | 418 | MobiDBLite | consensus disorder prediction | 355 | 418 | - | - | |
| Lcy3g2162 | 418 | Pfam | IQ calmodulin-binding motif | 147 | 161 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g2162 | 418 | Pfam | IQ calmodulin-binding motif | 121 | 141 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g2162 | 418 | Gene3D | - | 62 | 145 | - | - | |
| Lcy3g2162 | 418 | ProSiteProfiles | IQ motif profile. | 144 | 171 | - | - | |
| Lcy3g2162 | 418 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Lcy3g2162 | 418 | MobiDBLite | consensus disorder prediction | 401 | 418 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1577 | Lcy-Chr11:39600114 | Lcy3g2162 | Lcy-Chr3:48528838 | 2.19E-24 | dispersed | |
| Lcy12g1690 | Lcy-Chr12:37375438 | Lcy3g2162 | Lcy-Chr3:48528838 | 1.15E-12 | dispersed | |
| Lcy3g2162 | Lcy-Chr3:48528838 | Lcy6g0184 | Lcy-Chr6:1676458 | 5.69E-09 | dispersed | |
| Lcy12g0677 | Lcy-Chr12:8459747 | Lcy3g2162 | Lcy-Chr3:48528838 | 1.74E-73 | wgd | |
| Lcy2g0871 | Lcy-Chr2:7948711 | Lcy3g2162 | Lcy-Chr3:48528838 | 3.49E-112 | wgd |
Pathway information