Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2163 ATGTCGTGGCAAACTTACGTCGACGATCACCTCATGTGTGAGATTGAAGGCAACCATCTCACATCCGCCGCCATCGTCGGACACGACGCCAGTGTTTGGGCTCAGAGCTCCAAGTTCCCTCAGTTCAAGCCGGAGGAGATTTCGGCGATTATGAAGGATTTGGATGAGCCTGGGTCTCTTGCCCCAACTGGAATGCATCTTGGTGGCGTTAAATACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAAAAGGGCTCTGGTGGGATCACTGTGAAGAAAACTGAGAAAGCTCTGGTTATTGGTATATATGATGAACCTGTGACTCCCGGACAATGCAATATGATTGTTGAAAGGTTGGGAGATTACCTGGTCGAACAGGGTTTGTAG 396 49.75 MSWQTYVDDHLMCEIEGNHLTSAAIVGHDASVWAQSSKFPQFKPEEISAIMKDLDEPGSLAPTGMHLGGVKYMVIQGEPGAVVRGKKGSGGITVKKTEKALVIGIYDEPVTPGQCNMIVERLGDYLVEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48534447 48537038 - Maker00014516 Lcy3g2163 629355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2163 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 FunFam Profilin 1 131 - -
Lcy3g2163 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Lcy3g2163 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Lcy3g2163 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Lcy3g2163 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Lcy3g2163 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2163 Lcy-Chr3:48534447 Lcy4g2204 Lcy-Chr4:48666256 8.71E-84 dispersed
Lcy12g0682 Lcy-Chr12:8502907 Lcy3g2163 Lcy-Chr3:48534447 4.63E-73 wgd
Lcy3g2163 Lcy-Chr3:48534447 Lcy9g1637 Lcy-Chr9:41526861 8.58E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2163 K05759 - cit:102614190 246.128