Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2171 ATGTCATTATTAATTAACTCCCAAGTCTATTTTCGCAGTAACTTGAGCAGCAGCAACTTGAACGGAGATATCCCATCTTCCATCTCCAATCTCACTGCAATCAACTACTTTAATTTAAGTGGGAACAAGCTCACAGGTGTAGTTCCTGACGCTCTTCTCCAGAAATACAAAAATGGAACTTTAGTTTTAAGTGTGGAAGGAAATCAGGAACTCTGTTGGTCACCACCATGCAACCACAAAAAGGAGTTGCCAATTTCTATTCCTATTCTCTGCACTGTTATTGTGGCCCCTGTCCTTGTAATCTTCTTGGGAGTCATTATTGTAATCTATACAAGAAAATCCAAAGGTTTAACTTCTTTAAAAACACCCAATTACTTGAATTGTTGCTATCAGATTTTGCATATGTTTGCTGAGAATTTGATTGTTTTCTTAATTATTTCCTTAGAGAATTCGGTTGAATCGAAACATGATGGATCACTAAAATTGAAGATCAACAGACGGTACAGTTATTCAGAGGTTGCGAGTATTACTGATAACTTTGGAGTGGTTATTGGAGAAGGAGGATTTGGGAAAGTTTATTTGGGTGCTTTAAAAGACCAAACTAAGGTTGCTGTGAAAGTGCTTTCAGCATCATCACAGCAAGGCTATAAAGAATTTCGAGCAGAGGCACAACTCCTGATGGTTCTTCACCATCGCAACTTGGTTACTCTTCTTGGATACTGTGATGAAGGCAATCACAAGGCACTCATTTACGAATACATGGCTAATGGCAATTTAAAACAACATTTATCAGATACAAGTACGAACACTCTTAATTGGATGGAAAGACTCCAAATTGCAGTGGATGCAGCGCAGGGATTGGAGTATCTACACAATGGCTGCAAACCCCCTATTATCCATAGAGATTTGAAACCTGCCAACATATTATTAGACAATACAATGCAAGCCAAAATAGCCGATTTTGGATTGTCTAGAACTTTTGCAACTGAAAGTCAATCTCAACTTTTAACTCGTCTGGCTGGTACGCCTGGATATATTGATCCTGGAACTCAAACGTATGGAAATGTAAATAAGCAAAGCGATGTCTATAGCTTCGGAATTATCTTGCTCGAGTTGATCACTGGACAGCCTCCAATAGCGAGATCTTCTCAAGCCAATTTTCACATTCTAAACTGGTTGGAATCAATGATAAAAACAGGAGACATCCAAAACATTGTTGATTTGAAATTAGGAGGAAAGTTTAACCAAAACTCAGCGTGGAAGATTATAGAACTTGGCATGTCTTGCACACATCCAAGTGCAGTTGAAAGGCCAGACATGAGCCATGTTTTGATGGAGCTCAAGGAGTGTTTGGCAGTCCATCAAACCACTTTAATGCAGAGTCGTATCATGTCCACAAGAATTCTCTCTGAATCAGAAATAGCTCCATCTCCAAGGTAG 1440 39.03 MSLLINSQVYFRSNLSSSNLNGDIPSSISNLTAINYFNLSGNKLTGVVPDALLQKYKNGTLVLSVEGNQELCWSPPCNHKKELPISIPILCTVIVAPVLVIFLGVIIVIYTRKSKGLTSLKTPNYLNCCYQILHMFAENLIVFLIISLENSVESKHDGSLKLKINRRYSYSEVASITDNFGVVIGEGGFGKVYLGALKDQTKVAVKVLSASSQQGYKEFRAEAQLLMVLHHRNLVTLLGYCDEGNHKALIYEYMANGNLKQHLSDTSTNTLNWMERLQIAVDAAQGLEYLHNGCKPPIIHRDLKPANILLDNTMQAKIADFGLSRTFATESQSQLLTRLAGTPGYIDPGTQTYGNVNKQSDVYSFGIILLELITGQPPIARSSQANFHILNWLESMIKTGDIQNIVDLKLGGKFNQNSAWKIIELGMSCTHPSAVERPDMSHVLMELKECLAVHQTTLMQSRIMSTRILSESEIAPSPR 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48597118 48612639 + Maker00014355 Lcy3g2171 629363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2171 479 PANTHER OS07G0107800 PROTEIN-RELATED 14 456 - -
Lcy3g2171 479 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 254 460 - -
Lcy3g2171 479 Pfam Protein tyrosine and serine/threonine kinase 182 446 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2171 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2171 479 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524(InterPro)
Lcy3g2171 479 FunFam Leucine-rich repeat receptor-like protein kinase 151 253 - -
Lcy3g2171 479 SMART serkin_6 178 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2171 479 Gene3D Phosphorylase Kinase; domain 1 150 253 - -
Lcy3g2171 479 SUPERFAMILY L domain-like 14 72 - -
Lcy3g2171 479 SUPERFAMILY Protein kinase-like (PK-like) 162 447 IPR011009 -
Lcy3g2171 479 CDD STKc_IRAK 184 449 - -
Lcy3g2171 479 Gene3D Transferase(Phosphotransferase) domain 1 254 471 - -
Lcy3g2171 479 Gene3D Ribonuclease Inhibitor 10 82 IPR032675 -
Lcy3g2171 479 ProSiteProfiles Protein kinase domain profile. 178 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2171 Lcy-Chr3:48597118 Lcy3g2174 Lcy-Chr3:48638691 1.84E-210 dispersed
Lcy3g2170 Lcy-Chr3:48585395 Lcy3g2171 Lcy-Chr3:48597118 3.23E-139 tandem
Lcy3g2171 Lcy-Chr3:48597118 Lcy3g2172 Lcy-Chr3:48614006 1.29E-89 tandem
Lcy3g2171 Lcy-Chr3:48597118 Lcy8g1720 Lcy-Chr8:43716715 2.03E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65814 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2171 - - - 0.0