Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2183 ATGTCCTCAACCTCCCCAAGTTTTCCACGTCTGAGTGCATGCACCCTTGGGATGGAAAACGAGCAAACGTACAACACAGAGGAGCTGGTCGGCCTCATGCCAAGGCCGAGGCCGACCATCCAGAGGCCCAGGCCGAGCTCCACCCTTAGAGGCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCAAGACGCTTGAAGAGAGGCCTGAGAATTTCCTCAACCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCCTGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCATGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCCTGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCCTGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCCTGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCCTGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGACGCTTGAAGAGAGGCTTGGGAATTTCCTCAGCCTCCCCAAGCTTGCCCCAGAAGAGTGTACGCACCCCTGGGATGATTCCGAGGCGCTTGAAGAGAGGCTCAGGAATTTCCTTAGCCTCCCCAAGTTTCCCCCGACTGAGTCAAGTTTGAAGCAAAGAAGAAGAAATGCTCGGCCTTGGCACGAGGCCGACCCTCAGGCACGCATTCAGAGCAGCAAGGAGATATCCAACTATGGAGCAAATTTACACGTAATTTTGGACCACACGGGCGCACAAGGAGCTGACGAGGACAATCGAAGAGAGGTAGGACCAAAAGACCGACCCAGAGGAAGAACAAACCAAAGGGTCGGGCCGACATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATAATGGTCGGCCTCGGGAAAAGGCCGAGGCCGACCATTTGGCCCGCTTGCGCGGGCCGAGCCCGGTGGCCTCTTTTCGGTCCCTGATGCCCCGAATCGCCCCGGTTCCGCCTGGTTCGCCCCGAAACACCTCCGGATTCCTGAAAACCCTAGGAGGACAAACAGCTTCTCCTCGGTTTTCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTCTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACCATAAGATTAAGAAGGTGATCATGGATGTTATGAAACATTTGCTCCTTGCTTTTATGGGTGGCTTAGCTCTTGTCATTCTTGTTCAAGCTCAAGATCAATTAGGTTTCATCAGCTTAGATTGTGGACTACCAAGGAATGCAAGTTATATTGAACCAACAACAACACTTCGCTTTACTTCGGATGGTGACTACATAAACAGCGGTGTAAGCAAAAGCTTATCTTCTAATTATCAACCTTTATTTCAACAACAATATCATCATGTTAGAAGCTTTCCCCAAGGACGGAGGAATTGTTACAATATAGACATTAAAAGAGACACCAAGTATTTGATGCGAGCAAGTTTCTTATATGGAAATTATGATGGGCTTGGTAAACTGCCAGAATTTGATCTCTACTTTGGAGATAGCTTATGGGCAACAGTGAAATTCACTGATGAAAGCATTGATACCACGATAGACATCATATATGTGACTTCAAACAATCAAATACAAATTTGTCTTGTAAATACAAATGGTGGAACTCCATTCATCTCTTCATTGGAATTCAGACCTTTGTCCAATGAGACTTATAAGGTCTTGACAAGATCACTGTCGCTTTATAATCGAATAGATTTGGGTACAACAACAAATAGAACATACAGGTTTCCTGATGATATCTATGATCGTTTTTGGGTGCCTTTCAACTTTGACAAGTGGACAAGCATAAGTACTACACTTAAGATAGGTTCTGATGATCATAATTATTACCAGCTAGGATCTGCTGTTGTGGGAACTGCAGCTGTTCAAATAAATAGAAACGAGTCATTGCAGATACAATGGGAGTCAGAAGATGAAAACACCGAGTATTATGTATATATGCACTTTGCTGAACTAGAAAATCTCCAGCCCAATCAAACAAGAGGATTCAACATCACCTATAATGGCGATTATATGAATTTGTCATCAAGTGGATTGACAGGGAAAATGTCTTCAGATATATCCAATCTAGAAATGATACAAACTCTGGACTTGTCCAACAATAACCTGACAGGAAATATTCCTGCTTTTCTTTCTCAATTGCCAAAGCTCAAAGTCCTAAAGTTAGACAACAACAAGTTCACAGGAGTTGTTCCATCTGAACTCGTTAGGAAATTCGATGATGGTTCATTATTGTTAAGTGTTGAAGGGAATCCAAGTCTAGATGCATGTCTAACAGATTCATGTGCAAAGAAGAGTAAGAAAAATAATGTCGTCATCCCAATAGTAGCAACGATTGGTGGATTGGTAGCCATAGCTACAACTGCAACTATCATCTTTTGGATTGTTAAATCAAAGAAGAAACGAGAAAATGAAACTATTGCTTCACTAATAGATCATTCAGCAACCAAACACCAAAATAGTGACTTATTGGAAACAAAAAGACGACAATTTACATACTCAGAAGTATTGAAGATGACAAATAATTTTGAGAGAATTTTGGGCAAAGGAGGCTTTGGGATGGTTTACCATGGTATAGTAGACAATGTTCAAGTCGCTGTAAAGTTACTTTCTCAAGCATCAGGGCAGGGTTATCAACAATTTCAAGCAGAGGTACGTACACTTCACCAAAATTTATTTCTAAGAGACAAACTTGGCCTCATTTATGAGTTCATGGCCAATGGAAACTTAGCAGAGCATCTTTCAGAGACGAGTTCACGTATCTTAAGTTGGCAAGATAGACTCCAGATAGCCATGGATGCAGCACAAGGATTGGAGTACCTGCACGATGGTTGCAAACCGCCCATAATCCACAGAGATGTGAAAACGACAAACATCTTATTGACAGAGAATTTCCAAGGCAAGCTTGCAGACTTTGGTTTGTCCAAAAGTTTCCCAATAGAGGGCAACAACACCTACATGTCCACCATTGTTGCCGGCACTATTGGTTATCTTGATCCAGAGTACTATAAATCAAACAGGTTGACTGAGAAAAGTGATGTGTATAGCTTCGGAGTTACCCTATTGGAGATAATCAGCTGCAAACCTGTAATACCACGAACTGACAATGATGTTCATATCATTAAATGGGTAAATTCCCTGGCTGCTCAAGGGGATATTAATGGCATAATCGACCGAAGATTGGATAGAATCTATGATGTGAACTCAGTTTGGAAGGCAGTGGAAATAGCAATGGATTGTGTATCTGAGAGCCCTGCAAGAAGACCGACAATGAACAAAGTGGTGGCGGAACTGAAGAATTGCTTAGCCCTAGAATTGGAACGAACGCCAGAGAATCGAGCTTTCGATTCGACGAGTTCCATCAACACGATGTCCATTGCTATGGATTACAGTTATGGTTTGGATGTCAACCTTGGCCTATCCAAGGTGACTTCCTTTAGCCAAAGCGAGCATAGCTCAGTGGTAATTGGTGAGATTATGAAGGTGATCGTGGATGTTATGAAACATTCGCTCCTTGCTTTTCTGGGTGGCTTAGCTCTTGTCATTCTTGTTCAAGCTCAAGATCAATCAGGCTTCATTAGCTTAGATTGTGGATTGCCAACCGATACAAGTTACATTGAACCAACAACAAAACTTCGTTTTACTTCTGATGTTGACTATATTAACAGTGGTGTAAGCAAAAGCTTATCTTCTAATTATCAAAAAGTGTTTTTTCAACAATATCATCATGTTAGAAGCTTTCCCCAAGGACGCAGGAATTGTTACAATATAAGCATTAAAAAAGATACCAAATATTTGATGCGAGCAAGTTTCTTGTACGGAAATTATGATGGACTCAGTAAACTGCCAACATTTGATCTTTACTTTGGAGATAGCTTGTGGAGGACAATGAATTTCACTGATGACAGCATTGATTCCACAATAGACACCATACATGTAACCACCAACAATCATATACAAATTTGTCTTGTAAACACAAACAATGGAACTCCATTCATCTCTTCGTTGGAATTCAGACCTTTGCCTAATGAGACTTATGAAGTCCTGTCAAGATCATTATTGCTTCAAAGTCGACTCGATTATGGTACAACAACAAATAAAACATACAGGTTTCCAGATGATATGTATGATCGAATTTGGTTGCCTTACAACTGGCCCGAGTGGACAAGCATAAGTACCACACTTGCCATAGATGTTAATAGTAATAACTTTTACCAGCCAGGATCTACTATCATGGGAACCGCAGCCATTCGAATAAATACAAGCAAGCCCTTGGAGTTGTGGTGGGAGCCGGAAGATATAAACACCAAGTTTCATGTATTCATGCACTTTGCTGAAGTTGTAGATCTACAAGCCAATCAAACAAGAGGATTCAACATCACCTACAATGGGGATCATTGGTACGGACCTCTTATTCCCAACCACTTGTTCACAACAACGATCTTTAGTCGAAGACCATTACCGGTGCCAACTAAAAAGCATCTATTCGCACTGGTTCAAATCGAAAATTCAACACTCCCTCCGATCATAAATGCCATAGAAGTTTACTCTGTGGTTGATCTTTTAGAACTAACATCATATCAAAGAGATGGTATATGCTAA 4980 44.16 MSSTSPSFPRLSACTLGMENEQTYNTEELVGLMPRPRPTIQRPRPSSTLRGPEECTHPWDDSKTLEERPENFLNLPKLAPEECTHPWDDSETLEERPGNFLSLPKLAPEECTHPWDDSETLEERHGNFLSLPKLAPEECTHPWDDSETLEERPGNFLSLPKLAPEECTHPWDDSETLEERPGNFLSLPKLAPEECTHPWDDSETLEERPGNFLSLPKLAPEECTHPWDDSETLEERPGNFLSLPKLAPEECTHPWDDSETLEERLGNFLSLPKLAPEECTHPWDDSEALEERLRNFLSLPKFPPTESSLKQRRRNARPWHEADPQARIQSSKEISNYGANLHVILDHTGAQGADEDNRREVGPKDRPRGRTNQRVGPTWPDPYGRPRPFAEAEHNGRPREKAEADHLARLRGPSPVASFRSLMPRIAPVPPGSPRNTSGFLKTLGGQTASPRFSDLGIGGGVAYTTPVCSGLCWSCRSRLPQFLQIHHKIKKVIMDVMKHLLLAFMGGLALVILVQAQDQLGFISLDCGLPRNASYIEPTTTLRFTSDGDYINSGVSKSLSSNYQPLFQQQYHHVRSFPQGRRNCYNIDIKRDTKYLMRASFLYGNYDGLGKLPEFDLYFGDSLWATVKFTDESIDTTIDIIYVTSNNQIQICLVNTNGGTPFISSLEFRPLSNETYKVLTRSLSLYNRIDLGTTTNRTYRFPDDIYDRFWVPFNFDKWTSISTTLKIGSDDHNYYQLGSAVVGTAAVQINRNESLQIQWESEDENTEYYVYMHFAELENLQPNQTRGFNITYNGDYMNLSSSGLTGKMSSDISNLEMIQTLDLSNNNLTGNIPAFLSQLPKLKVLKLDNNKFTGVVPSELVRKFDDGSLLLSVEGNPSLDACLTDSCAKKSKKNNVVIPIVATIGGLVAIATTATIIFWIVKSKKKRENETIASLIDHSATKHQNSDLLETKRRQFTYSEVLKMTNNFERILGKGGFGMVYHGIVDNVQVAVKLLSQASGQGYQQFQAEVRTLHQNLFLRDKLGLIYEFMANGNLAEHLSETSSRILSWQDRLQIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQGKLADFGLSKSFPIEGNNTYMSTIVAGTIGYLDPEYYKSNRLTEKSDVYSFGVTLLEIISCKPVIPRTDNDVHIIKWVNSLAAQGDINGIIDRRLDRIYDVNSVWKAVEIAMDCVSESPARRPTMNKVVAELKNCLALELERTPENRAFDSTSSINTMSIAMDYSYGLDVNLGLSKVTSFSQSEHSSVVIGEIMKVIVDVMKHSLLAFLGGLALVILVQAQDQSGFISLDCGLPTDTSYIEPTTKLRFTSDVDYINSGVSKSLSSNYQKVFFQQYHHVRSFPQGRRNCYNISIKKDTKYLMRASFLYGNYDGLSKLPTFDLYFGDSLWRTMNFTDDSIDSTIDTIHVTTNNHIQICLVNTNNGTPFISSLEFRPLPNETYEVLSRSLLLQSRLDYGTTTNKTYRFPDDMYDRIWLPYNWPEWTSISTTLAIDVNSNNFYQPGSTIMGTAAIRINTSKPLELWWEPEDINTKFHVFMHFAEVVDLQANQTRGFNITYNGDHWYGPLIPNHLFTTTIFSRRPLPVPTKKHLFALVQIENSTLPPIINAIEVYSVVDLLELTSYQRDGIC 1659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48749197 48760353 + Maker00014086 Lcy3g2183 629375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2183 1659 PANTHER OS07G0107800 PROTEIN-RELATED 798 1232 - -
Lcy3g2183 1659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1075 1087 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2183 1659 Pfam Malectin-like domain 526 799 IPR024788 -
Lcy3g2183 1659 Pfam Malectin-like domain 1321 1644 IPR024788 -
Lcy3g2183 1659 Pfam Leucine Rich repeats (2 copies) 820 854 IPR025875 -
Lcy3g2183 1659 MobiDBLite consensus disorder prediction 349 371 - -
Lcy3g2183 1659 Gene3D Transferase(Phosphotransferase) domain 1 1031 1247 - -
Lcy3g2183 1659 ProSitePatterns Protein kinases ATP-binding region signature. 973 994 IPR017441 GO:0005524(InterPro)
Lcy3g2183 1659 Gene3D Ribonuclease Inhibitor 749 870 IPR032675 -
Lcy3g2183 1659 MobiDBLite consensus disorder prediction 299 331 - -
Lcy3g2183 1659 MobiDBLite consensus disorder prediction 387 405 - -
Lcy3g2183 1659 Pfam Protein tyrosine and serine/threonine kinase 969 1224 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2183 1659 ProSiteProfiles Protein kinase domain profile. 967 1228 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2183 1659 Gene3D Phosphorylase Kinase; domain 1 949 1023 - -
Lcy3g2183 1659 SUPERFAMILY L domain-like 797 861 - -
Lcy3g2183 1659 SUPERFAMILY Protein kinase-like (PK-like) 945 1224 IPR011009 -
Lcy3g2183 1659 MobiDBLite consensus disorder prediction 307 321 - -
Lcy3g2183 1659 MobiDBLite consensus disorder prediction 347 405 - -
Lcy3g2183 1659 SMART serkin_6 967 1198 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2183 1659 MobiDBLite consensus disorder prediction 34 64 - -
Lcy3g2183 1659 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1031 1236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0951 Lcy-Chr13:18006549 Lcy3g2183 Lcy-Chr3:48749197 4.20E-45 dispersed
Lcy3g2172 Lcy-Chr3:48614006 Lcy3g2183 Lcy-Chr3:48749197 7.54e-314 dispersed
Lcy3g2183 Lcy-Chr3:48749197 Lcy3g2185 Lcy-Chr3:48768543 1.25E-209 dispersed
Lcy3g2188 Lcy-Chr3:48796932 Lcy3g2183 Lcy-Chr3:48749197 7.72E-51 dispersed
Lcy4g1995 Lcy-Chr4:46387030 Lcy3g2183 Lcy-Chr3:48749197 5.76E-56 dispersed
Lcy9g1127 Lcy-Chr9:35209124 Lcy3g2183 Lcy-Chr3:48749197 5.71E-13 dispersed
Lcy3g2182 Lcy-Chr3:48736201 Lcy3g2183 Lcy-Chr3:48749197 4.61E-133 tandem
Lcy3g2183 Lcy-Chr3:48749197 Lcy3g2184 Lcy-Chr3:48765854 1.82E-144 tandem
Lcy13g0859 Lcy-Chr13:14923074 Lcy3g2183 Lcy-Chr3:48749197 2.88E-164 transposed
Lcy7g0790 Lcy-Chr7:7635222 Lcy3g2183 Lcy-Chr3:48749197 3.46E-21 transposed
Lcy12g0696 Lcy-Chr12:8706533 Lcy3g2183 Lcy-Chr3:48749197 2.38E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65821 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2183 - - - 0.0