Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2185 ATGAGAGTTCACCATAGAAACTTGACAAGCCTAGTTGGATATTTGAATGAAGGAAACCACATCGGCCTCATTTACGAGTACATGGCCAATGGAGATTTGGCAGAACACCTTTCAGCAGAGAGGAGCGTACGTATCTTAAGTTGGGAAGATAGACTTCGAATAGCAATGGACGCAGCACAAGGACTGGAGTACCTGCACTACGGTTGTAAGCCACCCATAGTCCACAGAGATGTGAAAACAACAAACATCTTGTTGACAGAGAATTTCCAAGGCAAACTTTCAGATTTTGGTCTTTCCAAAAGCTTCCCCACTGATGGCAAAACCCACATGTCCACGGTCGTTGCTGGCACTCCTGGTTACCTTGATCCAGAGTACTACATATCAAACAGGCTGACAGAGAAAAGCGATGTGTACAGCTTTGGGATTGCTCTATTGGAGATAATCAGTTGCAAACCAGTAATATTAAAAACCGGAGACACACCTCATATAGTTAAAAGGGTTACCGCTATGGTGGCGCAAGGAGATATTGAGAGTATAGTCGATCCAAGATTACAAGGGCAATATGAAACTAACTCTGTTTGGAAGACGGTGGAAGTGGCAATGGCTTGTGTAGCGGCGAATTCCAGCAGAAGGCCGACGATGAGCGACGTTGTGGCGGAACTCAAAGATTGCTTAGCCACGGAATTGAGTCGAAAGCAAGCGAATCGCTCGCTTGATTCAAGAAATTCCTTTGAAATGAACTCCATCACTGTTGGGATTAGTGCTTCTGATTCTAGTCCCATGGCGAGGCTTTCTGGCTTACCAGCAAATTCATCCAGTTACACCGAACCTGGAACAAAAATTAAGTACATATCAGATGCAGGCTATATAAACACCGGCGAAACAAAGAGCATATCATCGAAATACTTATCTATGTATCAACGACAATTATGGTATCTTAGAAGTTTTCCTCAAGAAATCAGGAATTGTTACAATATAAGCGCCATCAGAGACACTAAATATTTGATTCGAGCAACTTTCATATACGGAAATTATGATGGGCTCAATAGTACTCCGCAATTCGATCTATATTTGGGCAATACTCGATGGACAACAGTGGATGGTAGCTTCTACACAGAGATGATGCATGTGCCTTCAACAGACAAATTGCAGATTTGTCTTATCAACATTGGCTACGGAACACCATTCATCTCAGCATTAGAGTTTAGACAACTTCCTAATCTCACTTACCCAACTTTATCAAGATCCTTGTACCCTTATTATCGATTGGATATGGGGTCAATAACAAATGAACAATACAGGTTCCCTGATGATGTTTATGATCGAATTTGGGAAGGGTACAATCGTGATGACTATGCACAACTAAATACATTTGATACTGTAGATGCTGATGGTTCTAATATTTACCATCCAGCGGCCATAGTCATGGAGACTGCTGCAACTCCAAAAAATGGGACGAAGTACCTTAATTTCTCATGGAACTCAATTAACGAAAGTGATGAATTTTACGTATATATGCACTTTGCTGAACTTGAAAAGCTTCAGAGCAACCAATTCAGAGGATTTAATATCACACATAATGGGAACTATTGGGATGGACCTATAATTCCTGATTATTTAAGCACAACAACAACTTATTCTATCCAGCCATCTGTACCACCATCATCAAAACATCAATTTTCATTCTTCCCAGTAGAAAATTCAACACTTCCTCCAATCATCAATGGTTTAGAAATTTATCTTGTGGTGGAGATCTCAGAATTAGAATCATACAAGGGTGATGTGGATGCAATCAGTAATGTTCGGTCAACTTACGGAGTAATAAAAAATTGGGAAGGAGATCCATGTGTGCCAAGTGGATATCCATGGAGAGGTTTGAATTGCAGTTCTGATCCAGTCCCAAGAATCATATCACTGGATTTATCAAACAACTACTTGACTGGAGAAGTACCTGATTTTCTGTCCCAGTTGTCACACCTCCAAATCCTGAACTTAGAGAATAACAATCTCACAGGCTCTCTTCCACCTGAGCTTATCAAAAGAAAGAAGAACGGTTCACTTACACTAAGCATACAAGGCAATCCAAATTTAGATCAATGTATTTTAGAGACATGCACCAAGGAAACACCAAAAAAGAAGAAAAGCAGCAACAATATCATTATTCCAGTAGTAGCATCAGTGGGTGGATTGCTAGCCATCCTCATAATTGTGGGGATTATCTATTGGATTTCAAATAAGAAACAAGAAGGTAAAGATTTTACTTTGACAGAGAATCAAGTAGAGACAAACACCCATTTAGGCAGTTCCTTGGAGAAAAGGAGACAAAAGTTTACTTATGCAGAAGTCGTGGGGATGACCAACAATTTTGAGAGGGTTCTCGGTAAGGGAGGTTTTGGGATTGTTTACTATGGAGTTCTAGATGACACTCAAGTGGCTGTGAAGATGATATCTTCATCGGCAGGACAAGGCTACCATCAGTTTCAGGCAGAGGCATGCGCTTAA 2502 40.61 MRVHHRNLTSLVGYLNEGNHIGLIYEYMANGDLAEHLSAERSVRILSWEDRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTENFQGKLSDFGLSKSFPTDGKTHMSTVVAGTPGYLDPEYYISNRLTEKSDVYSFGIALLEIISCKPVILKTGDTPHIVKRVTAMVAQGDIESIVDPRLQGQYETNSVWKTVEVAMACVAANSSRRPTMSDVVAELKDCLATELSRKQANRSLDSRNSFEMNSITVGISASDSSPMARLSGLPANSSSYTEPGTKIKYISDAGYINTGETKSISSKYLSMYQRQLWYLRSFPQEIRNCYNISAIRDTKYLIRATFIYGNYDGLNSTPQFDLYLGNTRWTTVDGSFYTEMMHVPSTDKLQICLINIGYGTPFISALEFRQLPNLTYPTLSRSLYPYYRLDMGSITNEQYRFPDDVYDRIWEGYNRDDYAQLNTFDTVDADGSNIYHPAAIVMETAATPKNGTKYLNFSWNSINESDEFYVYMHFAELEKLQSNQFRGFNITHNGNYWDGPIIPDYLSTTTTYSIQPSVPPSSKHQFSFFPVENSTLPPIINGLEIYLVVEISELESYKGDVDAISNVRSTYGVIKNWEGDPCVPSGYPWRGLNCSSDPVPRIISLDLSNNYLTGEVPDFLSQLSHLQILNLENNNLTGSLPPELIKRKKNGSLTLSIQGNPNLDQCILETCTKETPKKKKSSNNIIIPVVASVGGLLAILIIVGIIYWISNKKQEGKDFTLTENQVETNTHLGSSLEKRRQKFTYAEVVGMTNNFERVLGKGGFGIVYYGVLDDTQVAVKMISSSAGQGYHQFQAEACA 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48768543 48773680 + Maker00014761 Lcy3g2185 629377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2185 833 Gene3D Ribonuclease Inhibitor 595 710 IPR032675 -
Lcy3g2185 833 SMART serkin_6 1 225 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2185 833 Pfam Protein tyrosine and serine/threonine kinase 2 221 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2185 833 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 28 234 - -
Lcy3g2185 833 ProSitePatterns Protein kinases ATP-binding region signature. 793 814 IPR017441 GO:0005524(InterPro)
Lcy3g2185 833 Pfam Leucine Rich Repeat 659 678 IPR001611 GO:0005515(InterPro)
Lcy3g2185 833 Pfam Leucine Rich Repeat 637 657 IPR001611 GO:0005515(InterPro)
Lcy3g2185 833 ProSiteProfiles Protein kinase domain profile. 1 225 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2185 833 SUPERFAMILY L domain-like 618 680 - -
Lcy3g2185 833 Gene3D Phosphorylase Kinase; domain 1 768 833 - -
Lcy3g2185 833 PANTHER OS07G0107800 PROTEIN-RELATED 266 831 - -
Lcy3g2185 833 SUPERFAMILY Protein kinase-like (PK-like) 770 832 IPR011009 -
Lcy3g2185 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 73 85 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2185 833 Gene3D Phosphorylase Kinase; domain 1 1 28 - -
Lcy3g2185 833 Pfam Malectin-like domain 266 581 IPR024788 -
Lcy3g2185 833 SUPERFAMILY Protein kinase-like (PK-like) 2 221 IPR011009 -
Lcy3g2185 833 Gene3D Transferase(Phosphotransferase) domain 1 29 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2183 Lcy-Chr3:48749197 Lcy3g2185 Lcy-Chr3:48768543 1.25E-209 dispersed
Lcy3g2185 Lcy-Chr3:48768543 Lcy3g2187 Lcy-Chr3:48788018 1.08E-229 dispersed
Lcy3g2184 Lcy-Chr3:48765854 Lcy3g2185 Lcy-Chr3:48768543 3.00E-205 tandem
Lcy3g2185 Lcy-Chr3:48768543 Lcy3g2186 Lcy-Chr3:48777128 9.14E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65822 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2185 - - - 0.0