Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g2189 | ATGAGAGTTTACCATGGAAACTTGACAAGCCTTGTTGGGTATTTGAATGAAAAAAGTCACTTTGGACTTATTTATGAGTATATGACCAAGGGTAACTTAGCACAGGTTCTTTCAGGATTGGAGTACCTGCATCATGGTTGTAAGCCACCTATAGTCCACAGAGATGTCAAAACAACAAACATCTTGCTGACAGACAACTTCCAAGCCAAACTTGCTGATTTCGGACTCTCCAAGAGTTTCCCAAAGGATGATAGCAAGACTCACATGTCCACAATGGTGGCTGGCACTCCTGGTTACTTCGACCCAGGATACTACGCCTCGAATAGACTAACAGAGAAAAGTGATGTTTATAGCTTCGGAGTAGTATTGTTGGAGATAATTACTTGCAGACCAGTGATCTCTAGAGCTCAGGAGAACGTTCACATAATTCAATGGGTGACCGCCATGATTGCGCAAGGGGACATCAGGAACGTGATAGACCCGAGATTAAAAGGGGAATTCGACTCCAACTCTGCTTGGAAATCGGTGGAAACAGCAATGGCTTGTGTGTCTTCAAATTCGAGCAGTAGGCCGACGATGAACCAGGTGGTAACAGAACTGAAAAATTGCCTGGCCATGGGAACGAGTCGGAAGACAGAGAATCGCTCTCTTGATTCAAGGGATTCCATTGAGACGTTCTCCATCTCCATTACTTTGCCAACATCCAGTCCGGAGGCAAGATGA | 723 | 44.95 | MRVYHGNLTSLVGYLNEKSHFGLIYEYMTKGNLAQVLSGLEYLHHGCKPPIVHRDVKTTNILLTDNFQAKLADFGLSKSFPKDDSKTHMSTMVAGTPGYFDPGYYASNRLTEKSDVYSFGVVLLEIITCRPVISRAQENVHIIQWVTAMIAQGDIRNVIDPRLKGEFDSNSAWKSVETAMACVSSNSSSRPTMNQVVTELKNCLAMGTSRKTENRSLDSRDSIETFSISITLPTSSPEAR | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 48802888 | 48804058 | + | Maker00015183 | Lcy3g2189 | 629381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g2189 | 240 | Gene3D | Transferase(Phosphotransferase) domain 1 | 10 | 226 | - | - | |
| Lcy3g2189 | 240 | ProSiteProfiles | Protein kinase domain profile. | 1 | 204 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g2189 | 240 | PANTHER | OS07G0107800 PROTEIN-RELATED | 1 | 211 | - | - | |
| Lcy3g2189 | 240 | SMART | serkin_6 | 1 | 204 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g2189 | 240 | PIRSF | ILK | 1 | 216 | - | - | |
| Lcy3g2189 | 240 | Pfam | Protein kinase domain | 22 | 198 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g2189 | 240 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 200 | IPR011009 | - | |
| Lcy3g2189 | 240 | FunFam | LRR receptor-like serine/threonine-protein kinase IOS1 | 7 | 213 | - | - | |
| Lcy3g2189 | 240 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 51 | 63 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g2189 | Lcy-Chr3:48802888 | Lcy9g1459 | Lcy-Chr9:39622693 | 2.03E-77 | dispersed | |
| Lcy3g2189 | Lcy-Chr3:48802888 | Lcy3g2190 | Lcy-Chr3:48804931 | 2.08E-82 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65825 | None | None | None | None | Lcy | PK |
Pathway information