Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2191 ATGTTTCAGGGATTTAAACTGACAATGGATCATTTGAACTGGGATGGATACGGATCGAGAGTTGCGACGAACTTGACGTCCTCGTCGTTGTCGTTTTGGAGCAATTACCAGCAAGGGATTGAGGAAAGGTTCATGATATCCAACTCAAATTCCCACTTCTTCAACTCATTTCAAGACCTCCCAATTAAAGAAGCTGCAACTTCTTCAACTGATCTGGTTTCAAAAACAGGGGAGCCTCTGGTTATGAGCCCTCCATTGACAAGCTTTGCAACATCCAAAGACATGGATGTTGCTGGCTATGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGACGACGGTCGCGACGTGCTCTCTCGAGTCATTGGACTGCTTGCTTTCAGCTACAAATAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTGTCAATGATCTTAACAGATTACACCAATTTATGGAACTTTGGAGGCAATGCAGCAACTTCAAAAGAATCTGACAAGAATCTCTCAAATTCCACAAAGAGAAGCCATGATCAAACTCATTTCAAACCAGCAGATTACTCTGTTTTTTCCAACACCATCATAAATCTCTCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAAAATCTGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAACTTTCAACAATCATGTTCATCAGGATCATCTTGTATTGATCAAGAGCCTGATCCAGAAGCCATTGCACAAATGAAGGAAATGATCTACAGAGCAGCAGCTTTCAGGCCTGTGAATTTGGGGCTAGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATCTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGGAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTGGAGAATCTTGGGCAAAAGCTTGAATCTTTGAATTGCCCTTCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCTTCATCATCCCACAACCATCTCATTAACCAATATCCCCAAAACTAA 1173 41.86 MFQGFKLTMDHLNWDGYGSRVATNLTSSSLSFWSNYQQGIEERFMISNSNSHFFNSFQDLPIKEAATSSTDLVSKTGEPLVMSPPLTSFATSKDMDVAGYESQLLTGFNGDKSTTVATCSLESLDCLLSATNSNTDTSVEDDGSVSMILTDYTNLWNFGGNAATSKESDKNLSNSTKRSHDQTHFKPADYSVFSNTIINLSDSTSDSGGFRIITDQNLPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPSTSIAFSFNPSFPIQTSSSSHNHLINQYPQN 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48815160 48816332 - Maker00015308 Lcy3g2191 629383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2191 390 Pfam Helix-loop-helix DNA-binding domain 299 340 IPR011598 GO:0046983(InterPro)
Lcy3g2191 390 Coils Coil 329 356 - -
Lcy3g2191 390 Gene3D - 295 358 IPR036638 GO:0046983(InterPro)
Lcy3g2191 390 MobiDBLite consensus disorder prediction 228 249 - -
Lcy3g2191 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 354 IPR036638 GO:0046983(InterPro)
Lcy3g2191 390 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 96 386 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2191 390 FunFam BHLH transcription factor 293 357 - -
Lcy3g2191 390 SMART finulus 296 345 IPR011598 GO:0046983(InterPro)
Lcy3g2191 390 MobiDBLite consensus disorder prediction 163 183 - -
Lcy3g2191 390 MobiDBLite consensus disorder prediction 209 251 - -
Lcy3g2191 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1143 Lcy-Chr1:10686800 Lcy3g2191 Lcy-Chr3:48815160 6.09E-37 dispersed
Lcy3g2191 Lcy-Chr3:48815160 Lcy8g0681 Lcy-Chr8:24954688 6.30E-34 dispersed
Lcy10g0797 Lcy-Chr10:24286369 Lcy3g2191 Lcy-Chr3:48815160 2.01E-09 transposed
Lcy1g1577 Lcy-Chr1:15809370 Lcy3g2191 Lcy-Chr3:48815160 5.03E-21 transposed
Lcy5g1597 Lcy-Chr5:37581508 Lcy3g2191 Lcy-Chr3:48815160 1.56E-09 transposed
Lcy12g0724 Lcy-Chr12:9199969 Lcy3g2191 Lcy-Chr3:48815160 4.50E-48 wgd
Lcy3g2191 Lcy-Chr3:48815160 Lcy9g2004 Lcy-Chr9:44925824 6.99E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19905 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2191 - - - 0.0