Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2208 ATGGACAGTTTATGGGATGTTGTGGTTGTGACAGCCATTCTTTTGACCACCATTATTCTCTATAGGAACTGCTTTAGACTTCTCAGATCAAAATTCTGCAACCAACTCCCTCTAGGCTCTCTTGGCTGGCCTTTCATTGGTGAGACTATTGAGTTCATCTCCTGTGCTTATTCCGACCGCCCTGAAACCTTCATGGACAAGCGTCGTCGACTGTATGGGAAGGTGTTCAAGTCACATATTTTTGGAAGTCCTACCATTGTTTCTACAGATGCAGAAGTCAGTAAGTTCATTCTGCAGAGTGATGCAAAGGCTTTCGTACCATCTTACCCGAAATCTTTGACAGAATTGATGGGGAAATCTTCCATTTTGCTGATAAACGGGAGCTTGCAGAAGAGAATCCATGGTCTTGTGGGAGCTTTCTTCAAGTCTTCACATCTCAAAGCTCAAATAACCAAGGATATGGAGTGTTATGATGGAGTTTCTCAAGCAACAGTTTCAAGAATTCATCGCGGGGCTTATGGCTTTGCCAGTGAACATTCCCGGAAGCAGGCTTTACCGATCGTTGCAGGCAAGTTGGCCAAAAGGAAAATGGTTAAACTAGTAAAGCAGATAATACAAGAAAGAAAAAGCAGTGGAATTTCCCCTGTCCCAAGAGATGTCATGGAAGTTTTGCTCAAAGATGAAAGTGAACAACTAACAGATGATCTAATAGCAGTGAACATGATTGACATGATGATTCCTGGGGAAGATTCAGTGCCAATCTTAATGACTCTTGCAGTAAAATACCTCTCCGATTGCCCAACTGCACTTCATCAGTTAACGGTGATCACGGAGACACTAAGGATGGGAAACATCATAATCGGGGTGATGCGGAAGGCCATGAAAGACGTGAAGATAAAAGGATACCTAATACCGAAAGGTTGGTCGGTGCTTACGTACTTTAGATCCGTTCATCTCGACGACAATCACTATGACTGGCCTTACAAATTCAATCCATGGAGGTGGCAAGATAGAGACTTGAGTAGTTGTAACTTCACTCCTTTTGGAGGTGGACAAAGACTATGCCCTGGACTTGACTTGGCCAGGCTTGAAGCTTCCATCTTCCTTCATCACTTTGTCACTCAGTTCAGATGGATTGCTGAGGAAGATAGAATCATAAACTTCCCCACAGTGAGGATGAAGAAGAGGATGCCAGTTTGGGTGAAGAGGAGAAGGGACTCATGA 1224 43.71 MDSLWDVVVVTAILLTTIILYRNCFRLLRSKFCNQLPLGSLGWPFIGETIEFISCAYSDRPETFMDKRRRLYGKVFKSHIFGSPTIVSTDAEVSKFILQSDAKAFVPSYPKSLTELMGKSSILLINGSLQKRIHGLVGAFFKSSHLKAQITKDMECYDGVSQATVSRIHRGAYGFASEHSRKQALPIVAGKLAKRKMVKLVKQIIQERKSSGISPVPRDVMEVLLKDESEQLTDDLIAVNMIDMMIPGEDSVPILMTLAVKYLSDCPTALHQLTVITETLRMGNIIIGVMRKAMKDVKIKGYLIPKGWSVLTYFRSVHLDDNHYDWPYKFNPWRWQDRDLSSCNFTPFGGGQRLCPGLDLARLEASIFLHHFVTQFRWIAEEDRIINFPTVRMKKRMPVWVKRRRDS 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48938655 48942637 - Maker00013836 Lcy3g2208 629400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2208 407 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 348 357 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy3g2208 407 PRINTS E-class P450 group I signature 345 355 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g2208 407 PRINTS E-class P450 group I signature 313 337 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g2208 407 PRINTS E-class P450 group I signature 355 378 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g2208 407 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g2208 407 PANTHER CYTOCHROME P450 26 191 380 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Lcy3g2208 407 Gene3D Cytochrome P450 30 404 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g2208 407 SUPERFAMILY Cytochrome P450 35 404 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g2208 407 Pfam Cytochrome P450 275 384 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0665 Lcy-Chr1:5707684 Lcy3g2208 Lcy-Chr3:48938655 5.28E-99 dispersed
Lcy3g2208 Lcy-Chr3:48938655 Lcy7g0979 Lcy-Chr7:10142468 4.99E-91 dispersed
Lcy4g1713 Lcy-Chr4:42994106 Lcy3g2208 Lcy-Chr3:48938655 1.74E-11 transposed
Lcy13g0159 Lcy-Chr13:1628527 Lcy3g2208 Lcy-Chr3:48938655 3.46E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2208 K12638 - csv:101217830 619.002