Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2218 ATGACCTCCATCCCTCTTCCCCACCACCACCACCACCACCACCATCACCTCTCCAAGTCCACCGCCGTCTCTACCACCACCACCACCACCACCTCCACCTCCACCACCCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGCTCCCGACTGCATCCTCGCCCCCTACTTCCCGCACGATCGCCAGCGCCAATTCCTCAACGCTCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAGAATCTCGATCCCTTCGAGAAAGAAGAGGCCATGCGCACCATCATTTTCCAGTCCGACGTCCGCTCCATCGATCCCGTCGGCGGATGCTACCGGATAATTCGAGACCTCCAGCGCCAGATTGAGTACAGCAAGGCGGAACTTGACCTCGTGCTCCATCAATTGGCGATCTGTAAGCAGCAGGCCGCCGCGGCTGCTGCGGCGGCGGCCGCGATTCTGGAGGCGGATCCGATGAGTGGATACGGCGGAATGGAGCAGCAATTTGTGGAGGGATATGAAGGGGAAGGGTTCGTGGTCGGGGAAAATGAGAATCGGGAGAGTTTGGAAGAGGAAGTGGAGGTTTGGGGGATTCAGGATTCGGGAATTTCGTCGTCGTCTTCGTTGCAATTGAAACAGGGCGGCGGCTCTGTTAATGATTTTGATGATATCAAGATCCATAATTCTCATCATCAACATCAACACCTTCTCAAGTTTCAACACCATGATCATCAATTGCTTCATCACAGTGAAGAAGCTATGCTGAAAATGGACAATGTGATGTTGAAAGAAGACTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTTGACACTTTATTTACCTTCCCAACTTGTGATACTTAG 885 53.22 MTSIPLPHHHHHHHHHLSKSTAVSTTTTTTTSTSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSIDPVGGCYRIIRDLQRQIEYSKAELDLVLHQLAICKQQAAAAAAAAAAILEADPMSGYGGMEQQFVEGYEGEGFVVGENENRESLEEEVEVWGIQDSGISSSSSLQLKQGGGSVNDFDDIKIHNSHHQHQHLLKFQHHDHQLLHHSEEAMLKMDNVMLKEDSDPIQQAQDQELKGAVDTLFTFPTCDT 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49014358 49016445 - Maker00014878 Lcy3g2218 629410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2218 294 MobiDBLite consensus disorder prediction 1 29 - -
Lcy3g2218 294 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 242 - -
Lcy3g2218 294 Pfam Lateral organ boundaries (LOB) domain 38 133 IPR004883 -
Lcy3g2218 294 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Lcy3g2218 294 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2218 Lcy-Chr3:49014358 Lcy4g1549 Lcy-Chr4:39163632 2.45E-28 dispersed
Lcy10g1977 Lcy-Chr10:43859147 Lcy3g2218 Lcy-Chr3:49014358 3.92E-31 transposed
Lcy8g1401 Lcy-Chr8:40681297 Lcy3g2218 Lcy-Chr3:49014358 6.02E-21 transposed
Lcy13g2187 Lcy-Chr13:40819260 Lcy3g2218 Lcy-Chr3:49014358 1.02E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19906 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2218 - - - 0.0