Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2220 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAGTAGTCATGGAGGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCCACTGCTAGTGTTTCTTCTGCCAATAAAAATGAGTTCCCCAATCAATATTTTACTCCTCAAACCCAACAACCGCCCCCTCCAAAGAAGAAGCGGAACCTCCCAGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGCTGATGGCGACGAATCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAAAATCTTCAGCTGCATAGAAGAGGGCACAATCTTCCATGGAAGCTGAAGCAGAGATCAAACAAAGAGGTGATAAAGAAGAAGGTATATGTTTGTCCAGAGCCAAGCTGTGTCCACCATGATCCATCAAGAGCTCTTGGAGACCTCACAGGAATCAAGAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACAAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCACGACATTAAACCCTCTTCTCTCTTCTTACAACAATAACAATTCACAAGAATTCTCGAATAACAACAACAATAATATTTTCGCTCTGAAACAAGATTTCAGCAGCAACAACAATAATAACATGAGATCGGCGGAAATCCCGCCGTGGCTGCAGCCTTCTGATCTCCAAGCGGAAATCTTCATTGGGAGCGGCCACGACCAGCATCATCATCATCAAACCCTAAACCCTAACCCTAACCCTAGCGGAATCGGGTGTGGGCCCAGTAATCTTGCTGCTCCTCCATATCAATCCTCTTCTCTTTCATCTCCTCATATTTCAGCCACTGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTGGTTCACGTGTCTACAGGTAATTTTGGGCAGATGGGTTTATGCTCACGTGAAGGTGAAATGGGAACAGGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGATTATAGGAATAAAGCTGCAGCTGCTTCTGCTTCTGCTTCTGCTACTGCTTCTGCTTCTGCTTCTGCACCCAACACATTTCTTCATGACATGATAAATTCCCTCTCTTCTGCTTCTGCCTCTCATCCCTTCCTCCAAGATTCCTCCTTCGACAACGACGCCGCCGCTTTCGCCGCTATGCATCATCACACAGCCACCGTCCCCGCCGCCAACGTCGCTGCTTCGGGCGGTCGAAGCGACGGTTTGACGAGAGATTTCTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCATTACTGGTTTTGGAAACTGCATTGTTCCCAATTCGTCCAATCTTCAGAGCCAAATTCAGAAGCCATGGCAGGGTTAG 1563 46.9 MMMKGNFLSQQQQQVVMEENLSNLTSASGEATASVSSANKNEFPNQYFTPQTQQPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSATTLNPLLSSYNNNNSQEFSNNNNNNIFALKQDFSSNNNNNMRSAEIPPWLQPSDLQAEIFIGSGHDQHHHHQTLNPNPNPSGIGCGPSNLAAPPYQSSSLSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLVHVSTGNFGQMGLCSREGEMGTGGGAVSCSSSSCTDYRNKAAAASASASATASASASAPNTFLHDMINSLSSASASHPFLQDSSFDNDAAAFAAMHHHTATVPAANVAASGGRSDGLTRDFLGLRPLSHGDILSITGFGNCIVPNSSNLQSQIQKPWQG 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49025676 49029311 - Maker00014883 Lcy3g2220 629412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2220 520 Gene3D Classic Zinc Finger 67 136 - -
Lcy3g2220 520 Gene3D Classic Zinc Finger 143 222 - -
Lcy3g2220 520 MobiDBLite consensus disorder prediction 24 73 - -
Lcy3g2220 520 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 126 160 - -
Lcy3g2220 520 SUPERFAMILY beta-beta-alpha zinc fingers 87 185 IPR036236 -
Lcy3g2220 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Lcy3g2220 520 MobiDBLite consensus disorder prediction 24 49 - -
Lcy3g2220 520 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Lcy3g2220 520 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Lcy3g2220 520 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lcy3g2220 520 FunFam protein indeterminate-domain 12-like 67 136 - -
Lcy3g2220 520 SMART c2h2final6 165 185 IPR013087 -
Lcy3g2220 520 SMART c2h2final6 88 110 IPR013087 -
Lcy3g2220 520 SMART c2h2final6 130 160 IPR013087 -
Lcy3g2220 520 MobiDBLite consensus disorder prediction 289 327 - -
Lcy3g2220 520 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 191 227 - -
Lcy3g2220 520 MobiDBLite consensus disorder prediction 342 356 - -
Lcy3g2220 520 MobiDBLite consensus disorder prediction 342 363 - -
Lcy3g2220 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 487 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy3g2220 520 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 164 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2220 Lcy-Chr3:49025676 Lcy5g0280 Lcy-Chr5:2632744 6.70E-104 dispersed
Lcy13g0146 Lcy-Chr13:1423410 Lcy3g2220 Lcy-Chr3:49025676 1.65E-131 wgd
Lcy3g2220 Lcy-Chr3:49025676 Lcy9g1971 Lcy-Chr9:44649215 3.41E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19907 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2220 K25870 - csv:101220200 696.427