Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2224 ATGACATGGAAGAGGATCTTATTGAGCGGGCATTCATCTTTTTATCTGACTGTAAGGATACGACCACAAATTAATCCGAAGCCAAGGAGCATCCGAGGAGTGAAGTCGACGCTCATCCCTCCACTTGGACACCTCTACCACATAACCATTTCAAGGTACTGTTTCCTTTCTCTTGCTTTGTCTTTTCTGCTTTCTGGGTTTCTTGTTTTTGCCTCGAAATCTGCTGTTCTTGGATTGAACTTGCGTTCTTGTCGTGATTTTCCCCAATGGCGATTGGGATTTGAGGTGAATTCAATTCGTGGAGCTGCGTTCTTCGTTGTTTTTGCGTCTTCTTTTGGTGCCTTTTCTAAGGACCGGTGGGATTTATTGTCGACATTGGTTTCCCTAAAGATGCCTTCCAAGTTGAAAATTGAGTCGATAAGACGGGGAAGAATAAGGGAGAGGATCCGTCGAAGCCATCTCTATACATTTGCTTGCCTCCGGGCGAACAGTGTAGCACGGGAGGTTGACGATTCGAATCCTTTGACAGGACCTGGTTTCTCACGAGTTGTCTGTTGTAACCAACCTCATCTCCATGACAGGAAGCCAATGAGATACTGCTCCAATTACATATCCACGACGAAGTATAATGTTCTTACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCCAATTTGTACTTTCTTTTGGCTGCATTGTTATCGCTCACACCAGTTGCCCCATTTTCTGCCGTGAGCATGATTGCTCCTCTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTATGCAGGATATGAAGGTTAATCTCAGGAAAGTGAGTGTCCACAAAGGGGATGGTGCTTTTGGTTATAAACCTTGGAACCAGATTCGAGTTGGGGATATAGTGAAAGTCGAGAAAGATCAGTTCTTTCCAGCCGATTTGCTTCTCTTGTCATCATGTTATGATGATGGTATATGTTATGTGGAAACGATGAATTTGGATGGTGAGACTAATCTCAAAGTAAAGAGAGCTTTGGAAGTAACTTTACCCTTGGATGACGATGCTACTTTCAAAGATTTTACTGGAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACCTTTGTAGGTAACCTTGAGTATGATCGCCAGGTTTATCCTCTTGATCCTAGTCAGATTCTCCTCAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGCGTTGCGATATTTACCGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCTCCTTCAAAAAGAAGTAGAGTAGAGAGAAAAATGGACAAAATTATTTACATCCTCTTTACTCTCCTTATATTGATCTCGTCAATCAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACGAAATGACAGACTGGTGGTATTTACAAACTTCTTTTGATGATGATCCACTGTACAACCCTCGTCAGCCAACCTTATCAGGGCTCATACATTTGGTCACTGCTCTTATACTTTATGGATATTTGATACCCATCTCATTATATGTTTCCATCGAGGTTGTCAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTAGCAATCCAGCTCGAGCTCGAACTTCGAATTTGAACGAGGAGTTGGGCCAGGTAGACACGATCCTATCCGACAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAGTGTTCCATTGCTGGCACTGCATATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCGTATGACCTTGAGGAGCATGATGAAGAATATACTGATGTTCCTGTGCAAAAAAATAGCCGACTGCCCTCCATGCCAAATTCCAGAAGCGGTTCAGAGATCGAATTGGAGACTGTTGTTACTTCAAGTGATGCCAAGGATCAGAAGTCTGCCATAAAGTACTTCAGTTTTGAGGACAGCCGCCTAACAGGTGGAAACTGGTTGAATGAGCCCAATCCTGATGTTCTTCTGTTATTCTTCAGAATTTTAGGAATTTGTCACACTGCAATTCCTGAGCTGAATGAGGAGACTGGTGTTTATACATATGAGGCCGAGTCCCCCGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAATCAACCTTGGTTGTCCGTGAAAGATATCCTTCACCTGATCAAATAATTGAAAGGGAATACAAAATTTTGAACCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCTGTAATTGTTAGGGACGAGCAAGGCCAGATTATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTGGCAAAGAACGGAAGAACATATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGGCCGAATATAATGCTTGGAACAGTGAGTTTCAGAAGGCTAAGACATCCATTGGCGGAGATAGAGATGCAATGCTTGAGCGAGTATCCGACCTCATGGAGCGAGAACTAACCCTTGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAAACTCAGATAACTTAGCACAGGATGGCAAAGAGGCCATGAAAGAATATATTTTGAATCAAATCACCAACGCTTCACAAATGATCAAGCTGGAGAAGGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCTCTCGAAGATGATATGAAGCTTCAATTCCTCGGACTTGCTGTTGATTGTGCATCGGTCATTTGCTGTACTGGGAAAACCACTTTAGCAATTGGTGATGGTGCGAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATAAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGGTTTCTTGAAAGGCTTCTAGTAGTTCATGGTCATTGGTGCTACAAGAGGATAGCACAAATGATTTGCTACTTCTTCTACAAGAATATTGCATTCGGATTAACGCTGTTCTACTTTGAAGCATACGCGGGATTTTCTGGGCAATCAATTTTTGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCAATGCCTGTAATTTCCCTTGGGGTTTTTGAGCAAGATGTCTCTTCTGAGGTGTGCCTACAGTTCCCTGCACTGTATCAGCAAGGACCCCGAAACTTGTTCTTCGACTGGCCTCGGATTTTTGGATGGATGGGGAACGCTCTCTACTCCTCTCTAGTCACTTTCTTCCTCAACCTCATCATCTTCTACGACCAGGCATTCCGCTCGGGCGGCCAAACTGCCGATATGACTGCTGTAGGAACGACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCCCTCACAATGAGCCATTTCACCTGGATCCAACACGTTCTCGTCTGGGGTAGTATCGCCATGTGGTATTTGTTCATCTTACTCTATGGAATGATAATATCCTCTGGGAATGCATATAAAATCTTTATTGAAGCACTAGGCCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAGAGAAGCTTCCATCCAATGGATCATCACATAATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGACTCAACCATGTGGACCAGGGAAAGGTCAAAGGCAAGGCAAAAGACCAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATAAGGCAGTTAAAAGGAAAGCTGCAAAAGAAGCACTCTTCCCTGGGAGCGTCTCCAAATTCTGCTATATCCTGA 4053 43.05 MTWKRILLSGHSSFYLTVRIRPQINPKPRSIRGVKSTLIPPLGHLYHITISRYCFLSLALSFLLSGFLVFASKSAVLGLNLRSCRDFPQWRLGFEVNSIRGAAFFVVFASSFGAFSKDRWDLLSTLVSLKMPSKLKIESIRRGRIRERIRRSHLYTFACLRANSVAREVDDSNPLTGPGFSRVVCCNQPHLHDRKPMRYCSNYISTTKYNVLTFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAVSMIAPLVFVVGLSMAKEALEDWRRFMQDMKVNLRKVSVHKGDGAFGYKPWNQIRVGDIVKVEKDQFFPADLLLLSSCYDDGICYVETMNLDGETNLKVKRALEVTLPLDDDATFKDFTGKIYCEDPNPNLYTFVGNLEYDRQVYPLDPSQILLRDSKLRNTAYAYGVAIFTGHDSKVMQNATKSPSKRSRVERKMDKIIYILFTLLILISSISSIGFAVKTKYEMTDWWYLQTSFDDDPLYNPRQPTLSGLIHLVTALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETSNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAARQMAYDLEEHDEEYTDVPVQKNSRLPSMPNSRSGSEIELETVVTSSDAKDQKSAIKYFSFEDSRLTGGNWLNEPNPDVLLLFFRILGICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPDQIIEREYKILNLLDFTSKRKRMSVIVRDEQGQIILLCKGADSIIFDRLAKNGRTYEEATTRHLNEYGEAGLRTLALAYRKLEEAEYNAWNSEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTNSDNLAQDGKEAMKEYILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKLQFLGLAVDCASVICCTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIFDDFYMLSFNVILTSMPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHVLVWGSIAMWYLFILLYGMIISSGNAYKIFIEALGPAPVYWIATILVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDSTMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGASPNSAIS 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49065099 49072673 + Maker00014405 Lcy3g2224 629416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2224 1350 SFLD C1.7: P-type atpase like 549 1057 - -
Lcy3g2224 1350 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 178 1296 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy3g2224 1350 Gene3D - 562 574 IPR023214 -
Lcy3g2224 1350 FunFam Phospholipid-transporting ATPase 867 1046 - -
Lcy3g2224 1350 SUPERFAMILY HAD-like 560 1061 IPR036412 -
Lcy3g2224 1350 ProSitePatterns E1-E2 ATPases phosphorylation site. 567 573 IPR018303 -
Lcy3g2224 1350 PRINTS P-type cation-transporting ATPase superfamily signature 890 900 - -
Lcy3g2224 1350 PRINTS P-type cation-transporting ATPase superfamily signature 565 579 - -
Lcy3g2224 1350 PRINTS P-type cation-transporting ATPase superfamily signature 1006 1025 - -
Lcy3g2224 1350 MobiDBLite consensus disorder prediction 613 637 - -
Lcy3g2224 1350 FunFam Phospholipid-transporting ATPase 734 865 - -
Lcy3g2224 1350 Gene3D - 260 431 - -
Lcy3g2224 1350 Pfam Phospholipid-translocating P-type ATPase C-terminal 1034 1282 IPR032630 -
Lcy3g2224 1350 Pfam Phospholipid-translocating ATPase N-terminal 186 251 IPR032631 -
Lcy3g2224 1350 NCBIfam HAD-IC family P-type ATPase 1000 1087 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy3g2224 1350 Gene3D - 870 1057 IPR023214 -
Lcy3g2224 1350 NCBIfam phospholipid-translocating P-type ATPase 199 1290 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy3g2224 1350 CDD P-type_ATPase_APLT_Dnf-like 201 1165 - -
Lcy3g2224 1350 Gene3D - 639 869 IPR023299 GO:0000166(InterPro)
Lcy3g2224 1350 Gene3D - 575 598 IPR023299 GO:0000166(InterPro)
Lcy3g2224 1350 Pfam Cation transport ATPase (P-type) 689 793 - -
Lcy3g2224 1350 SUPERFAMILY Calcium ATPase, transduction domain A 289 429 IPR008250 -
Lcy3g2224 1350 SFLD p-type atpase 549 1057 IPR044492 -
Lcy3g2224 1350 MobiDBLite consensus disorder prediction 1330 1350 - -
Lcy3g2224 1350 FunFam Phospholipid-transporting ATPase 260 430 - -
Lcy3g2224 1350 MobiDBLite consensus disorder prediction 621 637 - -
Lcy3g2224 1350 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 666 830 IPR023299 GO:0000166(InterPro)
Lcy3g2224 1350 SUPERFAMILY Calcium ATPase, transmembrane domain M 197 1278 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2224 Lcy-Chr3:49065099 Lcy7g0397 Lcy-Chr7:3379038 0 dispersed
Lcy3g2224 Lcy-Chr3:49065099 Lcy5g2449 Lcy-Chr5:47270391 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2224 K01530 - csv:101221220 2234.14