Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2226 TGCGCTTTGTCCAAAACTCGCCTCCAACTCCACGGATCAGATCCGAGGAGTTTGGCAAACCCTAGCTTGCTTTCTTCAATCTCTCTGTTCCATCTTCCCATGGCAGGTTTGGCTCCAGAAGGAACCCAATTTGATTCTCGCCAATATGATCTTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTTACCTCATATGATGAAGTCTATGAAAGTTTTGATTCAATGGGCCTGCAAGAGAACCTTCTCAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACGGCTACCTTCTGCTCTGGGATACTGCAGCAACTTGACTATGGTCTAGTCCAGTGCCAGGCTTTAGTTCTGGCACCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCCTGTGTGGGAGGGACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGGTGAATTTCTGA 717 45.47 CALSKTRLQLHGSDPRSLANPSLLSSISLFHLPMAGLAPEGTQFDSRQYDLKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQVNF 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49077602 49079574 - Maker00013784 Lcy3g2226 629418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2226 238 Gene3D - 45 238 IPR027417 -
Lcy3g2226 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 237 IPR027417 -
Lcy3g2226 238 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 237 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Lcy3g2226 238 Pfam DEAD/DEAH box helicase 98 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lcy3g2226 238 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 220 228 IPR000629 -
Lcy3g2226 238 SMART ultradead3 92 236 IPR014001 -
Lcy3g2226 238 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 238 IPR014001 -
Lcy3g2226 238 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2226 Lcy-Chr3:49077602 Lcy9g1463 Lcy-Chr9:39681402 9.29E-25 dispersed
Lcy13g2195 Lcy-Chr13:40870732 Lcy3g2226 Lcy-Chr3:49077602 9.90E-136 wgd
Lcy13g0134 Lcy-Chr13:1298270 Lcy3g2226 Lcy-Chr3:49077602 9.19E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2226 K03257 - csv:101221456 399.438