Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g2227 | ATGGCAGCTCCTACGGCCGAAGAAGAAGCTAACGATTCCTTTACCACCACTAACACGGTGATCGCCATTAACAGGGACAAGAACAGTCAATACGCGGTGAAATGGGCTGTGGAACATTTGTTCAGCCGGAAGAACGCCGGCGATTGTATCCTCATCCATGTTCGGAGCCAGAGCTTGCATCCCCAGGAAGCCGAAACGGTTCCTAAGGAGTATCGTCCACCGACTGAAGCTGAGTTGCATCAATTCTTTCTTCCCTACCGAGGATTCTGTGCGCGAAAAGGAATAGTTGCTAAGGAGATTATCATCCATGACATTGATGTTCCAAGTGCACTTATTGACTATGTCAGTAAACACCCCATTAGCAATATTGTTGTGGGTGCTTCCCACCGGAATGCTATTATGAGGAAGTTCAAACACCCAGATGTTGCGACGTGCCTACTCAAAACAACTCCAGAATCATGTTCTGTATATGTCATAGCTAGAGGCAAAGTTCATACTAAGAGATTGAGAAAGCGACAAAAGTCACAAACTGATGGGACAGAAACACCATCTGGAACTCCACATATCGACAGGTCTCTATCAAAAATACAAAAATCAGCATATTCTAATATCTCAGGATTTTCTGAGGACAAAGACAGGCATGTTTCTGCCATCAGTAATGATTCACTGTCAGGCAGTAGTGACTTTTCGGGGCCTTTCAGTTTCAAATCAATTGAAACATCCTCTGAGAACTTAGATTTTTCCTTAAACTCCTCAGAGACTAATTCGAAGAGCTTTGTTACCTCTAACACCACATCTCCCATAGAATCTGAGATGAGAAAGTTGAGGTTTGAACTCAAACAGACGATGGAAATGTATGACTCAGCTTGCAAGGAAGCTGTAGTAGCAAAACAAAAGGCAAAAGAACTTGAACAACTGAAGATGGAAGAAGAGAAGAAGTTAGAACAAGGTAGATCTGCAGAAGCGGCCCTAACAGCATTGGCAGAGTTTGAGAAGCAGAAGAGCAAGGCTGCGACAGAAGCAGCTCTAATGGCACAAAGGCTGGCAGAATTAGAGACCCAGAAAAAACGAAATATTGCTGAAAAGAAGGCTCGGGTGGAGGCAGAGGAGAAACAGAAAACACTTGATTTATTTGAACGCAATAATATCTGCTATAGACGATACAGCATTAACGAGATCGAAGCTGCAACAGATCATTTTAACGAGTCAAACAAGATTGGTGAAGGTGGATATGGTCCTGTTTACCAAGCCTTACTCGATCATACTTCTGTTGCCATTAAGATCTTGAGACCAGATAGATCTCATGGGCAAAGACAATTCCAGCAAGAGATTGAGGTTTTAAGCCGTATGAGGCATCCACACATGGTTCTCCTCTTAGGTGCTTGCCCAGAATATGGTTGCCTTGTTTATGAATATATGGAAAACGGGAGCTTAGAAGACCGTCTTTTCAGGAAAGACAACACTCCTCCAATCCCTTGGAAAACCCGTTTCAGGATAGCTGCTGACATTGGCACTGCCCTTCTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTGGATCACAACTACGTGAGCAAAATAGGTGACGTGGGTCTGGCAAGGCTAGTTCCACCATCGGTTTCCGATAGTGTCACTCAATATCACATGACAGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATACCAACAAACAGGAATGTTGGGTGTGAAATCAGATATTTACTCCTTTGGTGTTCTGCTACTCCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACACGGCACATTTCCACAGATACTCGATCCTACAATTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGGCCCGACCTTGGTACAGTTCTATTGCCAGAACTGGTCAGGCTAAAAAATCTGGGAATGAGCGAAACACCACCGAAGGGAACACTCTCAAACATCGGCATAGCACCTGATCAACGGGCTTATAACTCAGCTCCAACTCTGAAGGCATCAAAAGATGAGATAAAGAAAAAATGGACATCGAAGGACAGTGATGCAAAAAAAGTCTTAACTATACCACTGAACGGAAAACAAGTTGATGAACTAAGGAAGAGGCAGCAAAGCTCTGTACGCTGTTGGTCATTTGTAAGTTGTGCTTCTGCTACTCCTTCAGGGATGAAAAAACTACAGTCATTTTCATAA | 2292 | 43.89 | MAAPTAEEEANDSFTTTNTVIAINRDKNSQYAVKWAVEHLFSRKNAGDCILIHVRSQSLHPQEAETVPKEYRPPTEAELHQFFLPYRGFCARKGIVAKEIIIHDIDVPSALIDYVSKHPISNIVVGASHRNAIMRKFKHPDVATCLLKTTPESCSVYVIARGKVHTKRLRKRQKSQTDGTETPSGTPHIDRSLSKIQKSAYSNISGFSEDKDRHVSAISNDSLSGSSDFSGPFSFKSIETSSENLDFSLNSSETNSKSFVTSNTTSPIESEMRKLRFELKQTMEMYDSACKEAVVAKQKAKELEQLKMEEEKKLEQGRSAEAALTALAEFEKQKSKAATEAALMAQRLAELETQKKRNIAEKKARVEAEEKQKTLDLFERNNICYRRYSINEIEAATDHFNESNKIGEGGYGPVYQALLDHTSVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIPWKTRFRIAADIGTALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVSDSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGTFPQILDPTITDWPIEDTLGLAQLALKCCELRKRDRPDLGTVLLPELVRLKNLGMSETPPKGTLSNIGIAPDQRAYNSAPTLKASKDEIKKKWTSKDSDAKKVLTIPLNGKQVDELRKRQQSSVRCWSFVSCASATPSGMKKLQSFS | 763 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 49084957 | 49089576 | - | Maker00014122 | Lcy3g2227 | 629419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g2227 | 763 | PANTHER | OS02G0152300 PROTEIN | 21 | 686 | IPR051348 | - | |
| Lcy3g2227 | 763 | Gene3D | Phosphorylase Kinase; domain 1 | 366 | 472 | - | - | |
| Lcy3g2227 | 763 | SUPERFAMILY | Protein kinase-like (PK-like) | 381 | 659 | IPR011009 | - | |
| Lcy3g2227 | 763 | SMART | serkin_6 | 400 | 664 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g2227 | 763 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 19 | 159 | - | - | |
| Lcy3g2227 | 763 | Pfam | Protein kinase domain | 401 | 655 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g2227 | 763 | Coils | Coil | 286 | 320 | - | - | |
| Lcy3g2227 | 763 | Gene3D | Transferase(Phosphotransferase) domain 1 | 473 | 671 | - | - | |
| Lcy3g2227 | 763 | CDD | STK_N | 19 | 162 | - | - | |
| Lcy3g2227 | 763 | MobiDBLite | consensus disorder prediction | 167 | 192 | - | - | |
| Lcy3g2227 | 763 | Gene3D | HUPs | 6 | 161 | IPR014729 | - | |
| Lcy3g2227 | 763 | MobiDBLite | consensus disorder prediction | 178 | 192 | - | - | |
| Lcy3g2227 | 763 | Coils | Coil | 334 | 381 | - | - | |
| Lcy3g2227 | 763 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 372 | 472 | - | - | |
| Lcy3g2227 | 763 | Pfam | Universal stress protein family | 20 | 137 | IPR006016 | - | |
| Lcy3g2227 | 763 | ProSiteProfiles | Protein kinase domain profile. | 400 | 664 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g2227 | 763 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 518 | 530 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g2227 | Lcy-Chr3:49084957 | Lcy9g1759 | Lcy-Chr9:42784375 | 2.83E-194 | dispersed | |
| Lcy13g2196 | Lcy-Chr13:40882590 | Lcy3g2227 | Lcy-Chr3:49084957 | 3.58E-217 | wgd | |
| Lcy3g2227 | Lcy-Chr3:49084957 | Lcy4g2245 | Lcy-Chr4:49020170 | 9.34E-131 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65828 | None | None | None | None | Lcy | PK |
Pathway information