Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2232 ATGGATGGAGTTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTCGAAGAGTTCTTTCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTGCCAGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTCTGGTTGCTGTCCATAGCGATTCTTGGCTGCTCTCTGTTGCCTTCTATTTTGGTGCGAGATTTGGATTTGATAAATCTGACAGGAGGCGGCTTTTTAATATGATAAATGAATTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGAACCAAGTCAAACTTTAAATCACGGGAAGCTGAAATTCAAGGAATGTATGCAAGGCAGCCGCAGGCAAGGGACGAGAGAGAGGCCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGGGCATGTGGTGAGAATTACGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAATGCGTTAGAATAACCCCTGCCAAAGCAGAGCACATCAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGTCGCATTTAA 756 44.18 MDGVGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFFQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAFYFGARFGFDKSDRRRLFNMINELPTVFEVVTGIAKKQVKEKSSSANGSRTKSNFKSREAEIQGMYARQPQARDEREALYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49163114 49166517 - Maker00014352 Lcy3g2232 629424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2232 251 SMART PHD_3 197 245 IPR001965 -
Lcy3g2232 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lcy3g2232 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Lcy3g2232 251 FunFam PHD finger alfin-like protein 190 246 - -
Lcy3g2232 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy3g2232 251 Pfam PHD-finger 198 244 IPR019787 -
Lcy3g2232 251 CDD PHD_AL_plant 197 247 IPR044104 -
Lcy3g2232 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Lcy3g2232 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Lcy3g2232 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2232 K26274 - - csv:101222322 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2232 Lcy-Chr3:49163114 Lcy5g0103 Lcy-Chr5:1075456 3.00E-106 dispersed
Lcy6g1123 Lcy-Chr6:12809765 Lcy3g2232 Lcy-Chr3:49163114 7.64E-112 transposed
Lcy13g2209 Lcy-Chr13:40977467 Lcy3g2232 Lcy-Chr3:49163114 3.38E-106 wgd
Lcy3g2232 Lcy-Chr3:49163114 Lcy4g2251 Lcy-Chr4:49057523 2.86E-123 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1123 . 1 290 Alfin-like Transcription Factor Family AT1G14510 72.8 4.8e-107 384.8
Lcy13g2215 . 9 268 Alfin-like Transcription Factor Family AT1G14510 66.2 8.9e-93 337.4
Lcy3g2232 . 1 248 Alfin-like Transcription Factor Family AT1G14510 65.1 7.5e-92 334.3
Lcy4g2251 . 73 344 Alfin-like Transcription Factor Family AT1G14510 59.4 1.7e-83 306.6
Lcy5g0103 . 8 231 Alfin-like Transcription Factor Family AT1G14510 59.6 2.8e-78 289.3
Lcy13g2209 . 5 200 Alfin-like Transcription Factor Family AT1G14510 67.9 9.6e-71 264.2
Lcy7g0988 . 8 117 Alfin-like Transcription Factor Family AT1G14510 71.4 1.0e-43 174.5
Lcy13g2215 . 1 270 Alfin-like Transcription Factor Family AT5G26210 69.1 7.8e-105 377.5
Lcy4g2251 . 65 346 Alfin-like Transcription Factor Family AT5G26210 65.7 2.6e-100 362.5
Lcy3g2232 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 6.0e-97 351.3
Lcy6g1123 . 9 292 Alfin-like Transcription Factor Family AT5G26210 63.5 2.5e-87 319.3
Lcy13g2209 . 5 202 Alfin-like Transcription Factor Family AT5G26210 72.0 1.5e-79 293.5
Lcy5g0103 . 8 235 Alfin-like Transcription Factor Family AT5G26210 58.9 2.5e-79 292.7
Lcy7g0988 . 7 111 Alfin-like Transcription Factor Family AT5G26210 75.2 5.3e-45 178.7
Lcy13g2215 . 1 270 Alfin-like Transcription Factor Family AT3G42790 65.8 5.9e-97 351.3
Lcy3g2232 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 9.4e-95 344.0
Lcy4g2251 . 65 346 Alfin-like Transcription Factor Family AT3G42790 60.4 1.2e-89 327.0
Lcy6g1123 . 9 294 Alfin-like Transcription Factor Family AT3G42790 60.8 7.5e-84 307.8
Lcy5g0103 . 8 233 Alfin-like Transcription Factor Family AT3G42790 59.2 3.2e-79 292.4
Lcy13g2209 . 5 202 Alfin-like Transcription Factor Family AT3G42790 67.3 1.1e-71 267.3
Lcy7g0988 . 7 111 Alfin-like Transcription Factor Family AT3G42790 74.3 3.8e-43 172.6
Lcy5g0103 . 1 235 Alfin-like Transcription Factor Family AT5G05610 74.0 2.4e-103 372.5
Lcy3g2232 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 1.1e-89 327.0
Lcy13g2215 . 8 270 Alfin-like Transcription Factor Family AT5G05610 62.0 5.7e-89 324.7
Lcy4g2251 . 72 346 Alfin-like Transcription Factor Family AT5G05610 55.8 1.7e-80 296.6
Lcy6g1123 . 9 292 Alfin-like Transcription Factor Family AT5G05610 54.4 4.5e-78 288.5
Lcy13g2209 . 8 202 Alfin-like Transcription Factor Family AT5G05610 67.2 4.5e-70 261.9
Lcy7g0988 . 1 117 Alfin-like Transcription Factor Family AT5G05610 80.3 1.1e-52 204.1
Lcy7g0990 . 210 333 Alfin-like Transcription Factor Family AT5G05610 72.0 8.9e-50 194.5
Lcy5g0103 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.4 1.2e-83 307.0
Lcy13g2215 . 62 270 Alfin-like Transcription Factor Family AT3G11200 65.6 2.7e-75 279.3
Lcy4g2251 . 138 346 Alfin-like Transcription Factor Family AT3G11200 64.1 2.9e-74 275.8
Lcy3g2232 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.5 1.1e-73 273.9
Lcy13g2209 . 5 202 Alfin-like Transcription Factor Family AT3G11200 64.1 2.4e-68 256.1
Lcy6g1123 . 44 292 Alfin-like Transcription Factor Family AT3G11200 54.0 4.0e-63 238.8
Lcy7g0990 . 192 333 Alfin-like Transcription Factor Family AT3G11200 61.0 2.1e-48 189.9
Lcy7g0988 . 43 117 Alfin-like Transcription Factor Family AT3G11200 92.0 1.7e-37 153.7
Lcy6g1123 . 1 198 Alfin-like Transcription Factor Family AT2G02470 69.7 1.5e-71 266.9
Lcy3g2232 . 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 5.7e-63 238.4
Lcy13g2215 . 1 176 Alfin-like Transcription Factor Family AT2G02470 69.9 1.4e-61 233.8
Lcy4g2251 . 65 254 Alfin-like Transcription Factor Family AT2G02470 62.1 3.9e-56 215.7
Lcy5g0103 . 8 135 Alfin-like Transcription Factor Family AT2G02470 74.6 1.4e-53 207.2
Lcy7g0988 . 8 117 Alfin-like Transcription Factor Family AT2G02470 72.3 2.2e-43 173.3
Lcy13g2209 . 5 108 Alfin-like Transcription Factor Family AT2G02470 79.8 1.4e-40 164.1
Lcy13g2215 . 1 185 Alfin-like Transcription Factor Family AT5G20510 69.9 8.0e-70 260.8
Lcy3g2232 . 1 162 Alfin-like Transcription Factor Family AT5G20510 77.1 8.8e-69 257.3
Lcy4g2251 . 65 260 Alfin-like Transcription Factor Family AT5G20510 60.9 1.3e-59 226.9
Lcy6g1123 . 3 205 Alfin-like Transcription Factor Family AT5G20510 57.6 8.3e-59 224.2
Lcy5g0103 . 7 160 Alfin-like Transcription Factor Family AT5G20510 61.9 5.7e-52 201.4
Lcy13g2209 . 5 117 Alfin-like Transcription Factor Family AT5G20510 74.3 4.4e-44 175.3
Lcy7g0988 . 7 111 Alfin-like Transcription Factor Family AT5G20510 73.3 1.7e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19908 None None None None Lcy TF