Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2232 ATGGATGGAGTTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTCGAAGAGTTCTTTCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTGCCAGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTCTGGTTGCTGTCCATAGCGATTCTTGGCTGCTCTCTGTTGCCTTCTATTTTGGTGCGAGATTTGGATTTGATAAATCTGACAGGAGGCGGCTTTTTAATATGATAAATGAATTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGAACCAAGTCAAACTTTAAATCACGGGAAGCTGAAATTCAAGGAATGTATGCAAGGCAGCCGCAGGCAAGGGACGAGAGAGAGGCCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGGGCATGTGGTGAGAATTACGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAATGCGTTAGAATAACCCCTGCCAAAGCAGAGCACATCAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGTCGCATTTAA 756 44.18 MDGVGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFFQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAFYFGARFGFDKSDRRRLFNMINELPTVFEVVTGIAKKQVKEKSSSANGSRTKSNFKSREAEIQGMYARQPQARDEREALYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49163114 49166517 - Maker00014352 Lcy3g2232 629424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2232 251 SMART PHD_3 197 245 IPR001965 -
Lcy3g2232 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lcy3g2232 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Lcy3g2232 251 FunFam PHD finger alfin-like protein 190 246 - -
Lcy3g2232 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy3g2232 251 Pfam PHD-finger 198 244 IPR019787 -
Lcy3g2232 251 CDD PHD_AL_plant 197 247 IPR044104 -
Lcy3g2232 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Lcy3g2232 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Lcy3g2232 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2232 Lcy-Chr3:49163114 Lcy5g0103 Lcy-Chr5:1075456 3.00E-106 dispersed
Lcy6g1123 Lcy-Chr6:12809765 Lcy3g2232 Lcy-Chr3:49163114 7.64E-112 transposed
Lcy13g2209 Lcy-Chr13:40977467 Lcy3g2232 Lcy-Chr3:49163114 3.38E-106 wgd
Lcy3g2232 Lcy-Chr3:49163114 Lcy4g2251 Lcy-Chr4:49057523 2.86E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19908 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2232 K26274 - csv:101222322 491.115