Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2246 ATGGCTTTCAAAAAGTTCCTCTCTCTAAAACATTTGTTACCCAGTTGTTTGAAGCCAAAGAAACTCCTTACAAGCCCTGGATTTCAATCTTCAAAAAAGATTTCTTTGAGAAGAATCTTGTCACTTTCTGACATGAGTGTTAGATCTTCTCTTTCTGTTATCAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTTACCTTCAAAGAACTTACTGACCTCACTCAAAATTTTACCAAAAGTAACTATTTGGGGGAAGGGGGGTTTGGGCCTGTGTTCAAAGGGTTTATTGAAGAGAATTTCAAGGCTGGTTTGAAGTCTCAGCAAGTGGCTGTGAAGATTTTGGACTTGGATGGCTCTCAAGGCCATAGGGAATGGCTGGCTGAAGTGTTCTTTCTTGGGCAATTGAGACACCCAAATCTTGTTAATTTGATTGGGTATTGCCTTGAAGATGAGCAGAGGCTTCTTGTTTATGAATATATGGAAGGTGGAAACTTGGAGAATTTGTTGTTTAAAGGTTGTTATGTTTCAAATTTGACATGGTTGCAAAGGATGAAGATTGCATTAGGATCAGCTAAAGGCCTTGCTTTTCTCCACGAGGCCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTTGACTCGGACTACAATCCCAAGCTTTCGGATTTCGGGTTGGCCATAAATGGTCCCGACGAAAACGATTCGCACATAACGACTCGGATCATGGGGACGGAAGGCTATGCAGCCCCAGAATACATCATGACAGGTCATCTGTCAACAATGAGTGATGTGTTCAGCTTTGGAGTGTTTTTACTAGAGTTGCTGACCGGGCGACGAGCGGTCGACAGGAGCCGCCCGAGCCGAGAACAGAACTTGGTAGCTTGGGGGAGACATCTCTTGAAAGATCACCACAAACTTGAGAAGATAATTGATCCAAGGCTTGAAGGGCAGTACTCAAATGAAGGGGCTAAGAAATTGGCTGCATTGGCTTACCAATGCCTTAGCCACCACCCCAAATGCAGGCCTTCAATGGCCTCAGTGGTCAAAGATTTAGAGGCAGTCCTTAACATGAAAGAGTTTCTAACTGAGCCATTTGTGTACATTGTCCCAAATGAAGAGACCAAAAAGGAAGATGTAGAGAAGAATATGAATAAAGAGGTGGAGATGGAGGAGAAGAGACCGGAGAGCCGTCCCGGGGACCAAAAGGATCGCTGCTTTAGGCCTCGGTTGCTGTCATTGAAGTCGAGGTCGAGGTCGAGATCAGGTACTGTTCATTCTGATACAGCATTGTACAAGACTCTTGGAAGCAGTTTTTACACTTCAAAACAGGCTGCTGCTATTGTTTCTGCTTTGGTGAAAAGCACTGGAAATTAG 1398 43.35 MAFKKFLSLKHLLPSCLKPKKLLTSPGFQSSKKISLRRILSLSDMSVRSSLSVISDLSNSCNGSNLQIFTFKELTDLTQNFTKSNYLGEGGFGPVFKGFIEENFKAGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKGCYVSNLTWLQRMKIALGSAKGLAFLHEAEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDENDSHITTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVFLLELLTGRRAVDRSRPSREQNLVAWGRHLLKDHHKLEKIIDPRLEGQYSNEGAKKLAALAYQCLSHHPKCRPSMASVVKDLEAVLNMKEFLTEPFVYIVPNEETKKEDVEKNMNKEVEMEEKRPESRPGDQKDRCFRPRLLSLKSRSRSRSGTVHSDTALYKTLGSSFYTSKQAAAIVSALVKSTGN 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49292874 49295091 + Maker00015269 Lcy3g2246 629438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2246 465 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
Lcy3g2246 465 MobiDBLite consensus disorder prediction 384 416 - -
Lcy3g2246 465 ProSiteProfiles Protein kinase domain profile. 81 374 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2246 465 Gene3D Transferase(Phosphotransferase) domain 1 164 373 - -
Lcy3g2246 465 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
Lcy3g2246 465 CDD STKc_IRAK 87 360 - -
Lcy3g2246 465 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Lcy3g2246 465 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 164 371 - -
Lcy3g2246 465 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2246 465 PANTHER OS01G0588500 PROTEIN-RELATED 57 363 IPR050823 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2246 Lcy-Chr3:49292874 Lcy4g1564 Lcy-Chr4:39530662 2.11E-125 dispersed
Lcy2g0976 Lcy-Chr2:9106935 Lcy3g2246 Lcy-Chr3:49292874 1.21E-153 wgd
Lcy3g2246 Lcy-Chr3:49292874 Lcy4g2265 Lcy-Chr4:49148513 1.44E-142 wgd
Lcy3g2246 Lcy-Chr3:49292874 Lcy9g1932 Lcy-Chr9:44326369 1.58E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65829 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2246 - - - 0.0