Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2248 ATGGCGAGTTTTCATCTTTGTTCTTCAGTTTTCTTATTCTTCTTCATCCTCTGTTTTGTTCCTGTAATTTTCTCTCGATCGCCTGAAGATCAGCAGACCTTCATCGTTCACGTCTCTAAATCGGAGAAGCCTTCTCTGTTCTCCTCCCATCATCATTGGCACTCCTCCATTCTCGAATCACTCTCTCCTTCTCCTCATCCGACGAAGCTTCTTTACAACTACGAACGTGCCGCTAATGGCTTCTCCGCACACATCACGGCTGCTCAGGCGGCGGAGCTGCGTCAGGTTCCCGGTGTTATTTCGGTGATTCCTGATCGGATCCGACAGCTTCATACGACTCGGACGCCTCATTTCTTAGGTTTGGCGGATAACCTAGGGCTCTGGCCGGACGCGAATTACGCCGAAGATGTGATTATTGGCGTTCTCGACACTGGTATTTGGCCCGAACGGCCGAGTTTCTCCGATGAGGGACTGTCTCCGGTTCCGGAAAGCTGGAAAGGCATCTGCGAGACCGGGGACCGCTTTTCGGCTTCTGCCTGTAATCGGAAGATTATTGGTGCGAGAGCGTACTTTTACGGTTACGAGTCTAATTTAGGCAGATCGCTTCAAGATTCTTCGGATTTCAAATCTGCTAGGGATACTGACGGCCATGGAACTCACACGGCCTCTACGGCTGCAGGTTCGTTCGTTAAGAATGCGAGTTTTTTCCAATACGCTCGTGGAGAAGCCAGAGGCATGGCGAGCAAAGCTCGTATCGCCGCCTACAAGATCTGCTGGGAATTTGGTTGTTTCGACTCTGACATACTCGCCGCCATGGATCAGGCGATTGCCGATGGCGTCCACATCATCTCTCTCTCCGTTGGATCTACAGGCCGTGCCCCTGCGTACTATCGAGATTCCATCGCAATCGGAGCGTTCGGCGCGATGCAGCACGGGGTCGTCGTCTCTTGCTCAGCCGGAAACTCCGGTCCTGGTCCATACACGGCCGTGAACATCGCTCCATGGATCCTAACCGTCGGTGCTTCCACAATCGACAGAGAGTTTCTCGCGGATGTGATTCTCGGAGATGGTAGAGTTTTCAGCGGCGTATCGCTCTATTCTGGCGATCCTCTTGGCGATTCCAAGCTTCCGTTGGTCTACGCTGGAGATTGCGGTGACAGGTATTGTTATTCTGGAACTCTCGATTCGTCGAAAGTCGCCGGGAAGATCGTCGTGTGCGATCGAGGAGGAAACGCCAGAGTCGCCAAAGGAAGCTCCGTGAAAACCGCCGGAGGACTTGGTATGATACTCGCCAATACGGAGGAAAATGGCGAAGAGCTCTTGGCAGATTCTCATCTTATCCCGGGAACAATGGTCGGAGAAATCGCCGGTAACAAACTTAAAGAATACATCCATTCAGATCCGAATCCAACTGCTACAATCGTGTTTCGCGGAACTGTGATCGGCGATTCGCCGCCGGCTCCCCGAGTCGCCGCCTTCTCCAGCCGCGGTCCGAACTACCGCACAGCGGAGATTCTCAAACCGGACGTTATAGCTCCAGGAGTCAACATTTTGGCCGGCTGGAGCGGCTACAGCAGTCCGACCAGTCTAAGCATCGATCCTCGAAGAGTCGAGTTCAACATCATCTCCGGAACTTCAATGTCTTGCCCTCACGTCAGTGGCGTCGCCGCCTTACTCCGGAAGGCTTTTCCAACATGGTCACCGGCGGCAATAAAATCTGCTCTAGTCACCACTTCTTACTCACTGGACACTTCCGGCAGCCCGATCAAAGACCTCTCCACCAGCAAAGAATCAAATCCATTCGTCCATGGCGCCGGCCATATCGATCCCAACATAGCTCTGAATCCCGGCCTGATTTACGATATCAATCCTCAAGACTACGTTTCATTTCTCTGCTCGATCGGTTACGATTCTAAACAAATAGCTGTTTTCGTGAAGGAATCTTCATACGCTAAACTTTGTGAACACAAATTGAGCAACCCCGGCAATCTGAACTACCCATCCTTTGCCGTCGTGTTCGATTCCGACGCCGGCGAGGTGGTGAAATACACAAGAACCGTCACAAATGTCGGAGACGAAGCCGATGCTGTTTATGAAGTGAAAGTGGAAGCCCCAGAAGGAGTGGAAATCAGCGTTCTTCCAAAGAAGCTGGAGTTCAACGCGAACAAGACGACACAGTCTTACGAGATTTCATTCACCAAAATCAGTGGATTCACGAAATCAGCAAGCTTCGGATCAATTCAATGGAGTGATGGAAGTCACATCGTTAGAAGTCCAATTGCTGTCTCGTTCAACAGTGGATACGTAGCTTCAATGTAA 2319 51.4 MASFHLCSSVFLFFFILCFVPVIFSRSPEDQQTFIVHVSKSEKPSLFSSHHHWHSSILESLSPSPHPTKLLYNYERAANGFSAHITAAQAAELRQVPGVISVIPDRIRQLHTTRTPHFLGLADNLGLWPDANYAEDVIIGVLDTGIWPERPSFSDEGLSPVPESWKGICETGDRFSASACNRKIIGARAYFYGYESNLGRSLQDSSDFKSARDTDGHGTHTASTAAGSFVKNASFFQYARGEARGMASKARIAAYKICWEFGCFDSDILAAMDQAIADGVHIISLSVGSTGRAPAYYRDSIAIGAFGAMQHGVVVSCSAGNSGPGPYTAVNIAPWILTVGASTIDREFLADVILGDGRVFSGVSLYSGDPLGDSKLPLVYAGDCGDRYCYSGTLDSSKVAGKIVVCDRGGNARVAKGSSVKTAGGLGMILANTEENGEELLADSHLIPGTMVGEIAGNKLKEYIHSDPNPTATIVFRGTVIGDSPPAPRVAAFSSRGPNYRTAEILKPDVIAPGVNILAGWSGYSSPTSLSIDPRRVEFNIISGTSMSCPHVSGVAALLRKAFPTWSPAAIKSALVTTSYSLDTSGSPIKDLSTSKESNPFVHGAGHIDPNIALNPGLIYDINPQDYVSFLCSIGYDSKQIAVFVKESSYAKLCEHKLSNPGNLNYPSFAVVFDSDAGEVVKYTRTVTNVGDEADAVYEVKVEAPEGVEISVLPKKLEFNANKTTQSYEISFTKISGFTKSASFGSIQWSDGSHIVRSPIAVSFNSGYVASM 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49315876 49318194 - Maker00014889 Lcy3g2248 629440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2248 772 Pfam Subtilase family 136 592 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy3g2248 772 Gene3D - 631 765 - -
Lcy3g2248 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Lcy3g2248 772 Gene3D Peptidase S8/S53 domain 136 627 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy3g2248 772 Pfam Fibronectin type-III domain 663 762 IPR041469 -
Lcy3g2248 772 FunFam Subtilisin-like protease SBT1.5 136 358 - -
Lcy3g2248 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 111 IPR037045 -
Lcy3g2248 772 Pfam Peptidase inhibitor I9 33 111 IPR010259 -
Lcy3g2248 772 ProSiteProfiles Serine proteases, subtilase domain profile. 109 614 - -
Lcy3g2248 772 SUPERFAMILY PA domain 365 466 IPR046450 -
Lcy3g2248 772 CDD Peptidases_S8_3 109 580 IPR034197 -
Lcy3g2248 772 FunFam subtilisin-like protease SBT1.5 345 481 - -
Lcy3g2248 772 SUPERFAMILY Subtilisin-like 110 618 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy3g2248 772 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Lcy3g2248 772 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Lcy3g2248 772 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Lcy3g2248 772 FunFam Subtilisin-like protease SBT1.5 631 765 - -
Lcy3g2248 772 FunFam Subtilisin-like protease SBT1.9 23 111 - -
Lcy3g2248 772 CDD PA_subtilisin_like 351 474 - -
Lcy3g2248 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 760 IPR045051 -
Lcy3g2248 772 Gene3D - 345 481 - -
Lcy3g2248 772 Pfam PA domain 376 460 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2090 Lcy-Chr13:39890109 Lcy3g2248 Lcy-Chr3:49315876 1.14E-157 dispersed
Lcy3g2248 Lcy-Chr3:49315876 Lcy8g1248 Lcy-Chr8:39042713 2.30E-246 dispersed
Lcy2g0978 Lcy-Chr2:9124001 Lcy3g2248 Lcy-Chr3:49315876 4.76E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2248 - - - 0.0