Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2276 ATGGCTGCTCTTCTTCGAGCTCTCTTCCTCTTCTCTCTCCTCATTCCACTTTCTTCTTCTTCTTCTTCAGCTGATTCTTCAAAGAAGACCTTCATTGTGCAAGTTCACAGAGATTCCAAGCCTTCCATTTTCCCAACTCACAAGCACTGGTACGAGTCGTCTCTAGCCTCCATCTCTCCCAATAAGGCAACGACATCTTCTTCCACTGCTGATGGACCCATCATTCACACGTATGAAAATGTCTTCCATGGCTTCTCTGCAAAGCTCTCACCTTTTGAAGTTGAGAAGCTTCAAACTTTTCCCCACATCGCCTCCGTCATCCCTGAACAAGTTCGCCATCCTCACACAACTCGTTCCCCTGAGTTCCTTGGCCTTAAGACCACCGACAGTGCTGGGTTGCTCAAAGAGTCCGACTTTGGATCTGACCTTGTAATCGGAGTCATCGATACGGGTATTTGGCCGGAGCGGCAGAGTTTCAACGACCGCGATCTGGGTCCTATTCCTACCAAATGGAAAGGCCAGTGTGTTACGGCCAAGGACTTTCCGGCCACCTCTTGCAACCGTAAACTTATTGGGGCTCGATTTTTCTGTAGTGGGTATGAGGCCACCAATGGAAAGATGAACGAGACCACCGAGTACCGCTCGCCGCGAGATTCCGATGGCCATGGTACTCACACGGCGTCCATTGCTGCAGGTCGTTATGTGTTTCCAGCTTCAACTTTAGGCTATGCTCGTGGGAGAGCGGCTGGAATGGCTCCTAAGGCTCGTCTTGCCGCCTATAAAGTCTGCTGGAATGCCGGCTGCTACGATTCCGATATTCTTGCTGCTTTTGATGCTGCCGTTTCCGACGGTGTCGATGTTGTGTCACTCAGCGTTGGCGGTGTGGTTGTGCCGTACTATCTCGATGCTATCGCCATAGCGGCTTTTAGAGCGGTGGCATCCGGCGTTTTTGTCTCGGCATCAGCAGGTAACGGTGGCCCGGGGGGTCTCACTGTGACTAATGTGGCACCCTGGGTTACAACTGTAGGAGCTGGAACCATGGATAGAGATTTTCCTGCTGATGTTAAGCTGGGAAATGGTAGGGTTATACTCGGAACAAGTGTCTATGGCGGACCGGCTCTGGCTCCGGGTCGTTTGTATCCTCTTATTTATGCAGGAACTGAAGGCGGTGATGGGTATTCTTCGTCTCTATGCTTAGAAGGTTCTTTGAACCCCAATTTAGTGAAAGGGAAGCTTGTACTATGTGATAGGGGCATCAATTCAAGAGCTGCTAAAGGTGAGGTTGTGAAGAAGGCCGGAGGATTGGGAATGATTTTAGCTAATGGGGTCTTTGACGGTGAGGGTTTAGTAGCTGACTGCCACGTACTACCTGCCACCGCCGTGGGTGCATCCGGCGGCGATGAGATTCGCAAATATATAGCTGAAGCAGCGAAGTCTCAGTCACCGCCAACAGCAACAATTTTGTTCAAGGGAACTCGGCTTGGAGTCAGGCCAGCACCGGTTGTTGCTTCATTTTCAGCTCGAGGTCCTAATCCAGAGTCCCCTGAAATCGTTAAGCCTGATGTGATTGCGCCTGGTTTGAACATTCTTGCCGCTTGGCCTGATAAAATTGGGCCCTCTGGAATTCCCACAGACAAGCGTACCACAGAGTTCAACATACTTTCCGGCACTTCCATGGCCTGTCCTCATGTCTCAGGCTTGGCTGCCCTTCTGAAGGCGGCACATCCAGGATGGAGTCCAGCAGCTATAAAATCAGCCCTAATGACCACGGCTTATACTTTGGACAACCGGGGTGAGACGATGTTAGATGAATCTTCAGGCAATACTTCCACGGTCTTGGACTTTGGAGCTGGTCATGTTCACCCACAAAAGGCGATGGACCCTGGTTTAATCTATGACCTTAACACATATGATTATGTTGATTTCTTGTGTAACTCCAACTACACCACTAAGAATATCCAAGTAATTACGGGTAAGATTGCAGATTGTAGTGGGGCAAAAAGGGCTGGCCATACTGGGAACTTGAATTACCCTTCACTGTCTGTGGTGTTTCAACAATATGGTAAGCACAAGATGTCTACGCATTTCATAAGAAGTGTGACCAACGTTGGGGACGCCAATTCTATCTACAAGGTAACAATAAAGCCACCAAGTGGAATTTCAGTGACAGTGGAGCCAGAAAAGCTGGCGTTTAGAAGGGTTGGGCAAAAATTGAGCTTCTTGGTTAGGGTGCACGCAATGGCTGTTAGACTTTCTCCTGGAAGCTCTAGCATGAAGAGTGGTTCTATAGTTTGGACTGATGGAAAGCACGTAGTCACGAGTCCTTTGGTTGTCACCATGCAGCAACCTCTGCAGTAG 2358 49.45 MAALLRALFLFSLLIPLSSSSSSADSSKKTFIVQVHRDSKPSIFPTHKHWYESSLASISPNKATTSSSTADGPIIHTYENVFHGFSAKLSPFEVEKLQTFPHIASVIPEQVRHPHTTRSPEFLGLKTTDSAGLLKESDFGSDLVIGVIDTGIWPERQSFNDRDLGPIPTKWKGQCVTAKDFPATSCNRKLIGARFFCSGYEATNGKMNETTEYRSPRDSDGHGTHTASIAAGRYVFPASTLGYARGRAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVSDGVDVVSLSVGGVVVPYYLDAIAIAAFRAVASGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTMDRDFPADVKLGNGRVILGTSVYGGPALAPGRLYPLIYAGTEGGDGYSSSLCLEGSLNPNLVKGKLVLCDRGINSRAAKGEVVKKAGGLGMILANGVFDGEGLVADCHVLPATAVGASGGDEIRKYIAEAAKSQSPPTATILFKGTRLGVRPAPVVASFSARGPNPESPEIVKPDVIAPGLNILAAWPDKIGPSGIPTDKRTTEFNILSGTSMACPHVSGLAALLKAAHPGWSPAAIKSALMTTAYTLDNRGETMLDESSGNTSTVLDFGAGHVHPQKAMDPGLIYDLNTYDYVDFLCNSNYTTKNIQVITGKIADCSGAKRAGHTGNLNYPSLSVVFQQYGKHKMSTHFIRSVTNVGDANSIYKVTIKPPSGISVTVEPEKLAFRRVGQKLSFLVRVHAMAVRLSPGSSSMKSGSIVWTDGKHVVTSPLVVTMQQPLQ 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49588054 49590411 - Maker00014299 Lcy3g2276 629468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2276 785 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 115 IPR037045 -
Lcy3g2276 785 ProSitePatterns Serine proteases, subtilase family, serine active site. 556 566 IPR023828 -
Lcy3g2276 785 Gene3D Peptidase S8/S53 domain 142 639 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy3g2276 785 FunFam subtilisin-like protease SBT1.5 348 494 - -
Lcy3g2276 785 FunFam Subtilisin-like protease SBT1.5 142 361 - -
Lcy3g2276 785 Pfam PA domain 380 469 IPR003137 -
Lcy3g2276 785 Gene3D - 643 781 - -
Lcy3g2276 785 CDD PA_subtilisin_like 354 487 - -
Lcy3g2276 785 Pfam Peptidase inhibitor I9 30 115 IPR010259 -
Lcy3g2276 785 CDD Peptidases_S8_3 113 592 IPR034197 -
Lcy3g2276 785 Pfam Subtilase family 140 607 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy3g2276 785 SUPERFAMILY Protease propeptides/inhibitors 29 113 - -
Lcy3g2276 785 Pfam Fibronectin type-III domain 674 778 IPR041469 -
Lcy3g2276 785 SUPERFAMILY Subtilisin-like 115 630 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy3g2276 785 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Lcy3g2276 785 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
Lcy3g2276 785 PRINTS Subtilisin serine protease family (S8) signature 555 571 IPR015500 -
Lcy3g2276 785 FunFam Subtilisin-like protease SBT1.5 643 781 - -
Lcy3g2276 785 Gene3D - 348 495 - -
Lcy3g2276 785 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 59 776 IPR045051 -
Lcy3g2276 785 FunFam Subtilisin-like protease SBT1.9 19 115 - -
Lcy3g2276 785 ProSiteProfiles Serine proteases, subtilase domain profile. 119 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2276 Lcy-Chr3:49588054 Lcy8g1248 Lcy-Chr8:39042713 9.85E-300 dispersed
Lcy5g1477 Lcy-Chr5:35427627 Lcy3g2276 Lcy-Chr3:49588054 8.49E-91 dispersed
Lcy3g2276 Lcy-Chr3:49588054 Lcy6g0219 Lcy-Chr6:2004756 2.55E-256 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2276 - - - 0.0