Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2277 ATGCCTCCAATGGTGTTTCATTCACAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATTCCCTGCGGCAGTGTTCCTGAAGATAAATGTAAGAATGAAAATCCAGAGGATCAGCTGAGATATCCCTTCCCACAATTAACTTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGCAAAGATGAGTTTTGTAGAATTATTGAATCGTATAAACCAAACATTGTTTACTTACAAGGGGAACGGCTTCAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATCTGTCCACCGTAGAGGCGATAAGTGGGCTCTTTAGTTCTCCGTTGCCCACCACTGTATATTTGGAAATAGCAAATGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGATGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACTGCCTTGTTTTTCCTGAGAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGACCACATCTTCTAGGGGAACGTTTGAAAATAAATGTTGAACCCTTAGCCCTAGAGAAAGAGGTCGATGATGATGAAGAAAGTTCATTGGAAATTCCTTCAGTGAGCATACTTGATAATGATGTGGAAATGAGATTTCTTGTCTGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACACCCTCTTGGACATTGAAATTCGAGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCAACATGCAGTTTTGCCCACGTCTCACTACTGGTGTCAGGCAGTGCTCAAGCTTGTTTCGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGCGAACTAGTGCAGACACTAATAGACGATGAAGGAAGCAAACATCTATCTGAGCCACGGAAATCAGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGGTTGTCCAATCACTTCTCTTCATCTTCTTTTATGAGGTTGTATTTCTAATTCTATATTCTGGTCTAGAATCTGTACACTCTTGA 1257 41.61 MPPMVFHSQVPARYTCRLLAIPCGSVPEDKCKNENPEDQLRYPFPQLTSSGRLEVQVLSNPSKDEFCRIIESYKPNIVYLQGERLQNDEVGSLVWGGVDLSTVEAISGLFSSPLPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAYASFRMYCSGNCLVFPESSHKEVSEDLGPHLLGERLKINVEPLALEKEVDDDEESSLEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLNTLLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLIDDEGSKHLSEPRKSVSIACGATVFEVSMKVPSWASQVVQSLLFIFFYEVVFLILYSGLESVHS 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49598967 49607982 - Maker00013706 Lcy3g2277 629469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2277 418 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 396 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0075 Lcy-Chr13:805090 Lcy3g2277 Lcy-Chr3:49598967 8.05E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g0460 . 174 540 ARID Transcription Factor Family AT1G04880 57.0 5.0e-107 385.6
Lcy9g2358 . 384 628 ARID Transcription Factor Family AT1G20910 50.2 1.2e-64 244.6
Lcy9g2296 . 16 309 ARID Transcription Factor Family AT1G76110 67.4 2.0e-111 399.8
Lcy13g0075 . 2 772 ARID Transcription Factor Family AT3G43240 59.5 3.7e-264 908.3
Lcy3g2277 . 5 396 ARID Transcription Factor Family AT3G43240 53.5 3.2e-114 410.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74