Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g2279 | ATGTGGTGGAGATCGGCCTCTTTCATCCTCGACAAGCAGCAAACTGAAAGCGTTTCGAAGCCCCCAGAAACCCTTTCCATTTCCCCACCAGAGCAATCTTCTATGGCGGACACATTCCAGAACCCTAACCCTAAAATATCTGCCTACTACCAAAGTAGGGCTGCCCACACCGCCGTCGTCACCAGTGATTGGCTCGCTCAGGCGCAGGCCGCTGTCGGATTCCATACCGACGACCAATTATTGTCGGAAACTGACGTCGGGGACTCTGAATCCGGCAAGCCCTTCAGTGTGATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTAGCCGAGGCCGTTGCAGCTATTCGGGCTTTGGCGGCTGTAATTCGGTCTAGTCAGGCCACGACTATGATGGAGCTCGAAATCGAGCTGAAAAAGGCCTCGGACTCTCTAAAATCGTGGGATACAACTTCGATATCATTAACAGCTGGCTGTGATTTGTTCATGCGGTATGTAACTCGAACATCAGCTTTAGAATATGAGGACTTCAAGTCTGCTAAATCTCGCCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTCAGTCAGGATTTCATTTTTGATGGTTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTGGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGTAGTTCCTTGA | 747 | 47.79 | MWWRSASFILDKQQTESVSKPPETLSISPPEQSSMADTFQNPNPKISAYYQSRAAHTAVVTSDWLAQAQAAVGFHTDDQLLSETDVGDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTVVP | 248 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 49614034 | 49620518 | - | Maker00014419 | Lcy3g2279 | 629471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g2279 | 248 | FunFam | Translation initiation factor eIF-2B subunit alpha | 93 | 195 | - | - | |
| Lcy3g2279 | 248 | MobiDBLite | consensus disorder prediction | 13 | 39 | - | - | |
| Lcy3g2279 | 248 | Gene3D | - | 94 | 195 | IPR042528 | - | |
| Lcy3g2279 | 248 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 95 | 245 | IPR037171 | - | |
| Lcy3g2279 | 248 | Pfam | Initiation factor 2 subunit family | 107 | 245 | IPR000649 | GO:0044237(InterPro) | |
| Lcy3g2279 | 248 | Coils | Coil | 132 | 152 | - | - | |
| Lcy3g2279 | 248 | Gene3D | - | 197 | 246 | IPR042529 | - | |
| Lcy3g2279 | 248 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA | 92 | 245 | IPR051501 | GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g2279 | K03239 | - | csv:101211420 | 447.588 |