Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2282 ATGAAAGAGACCGATACCATGGAAAAGCCCCTCGCCGCCGGAATCTCGAATTCCGGCCACCAATCCGCCACCGGAAAAAACCCCAAAAACAAAAAGAAGCTCCTGATCGTAGCCCTCTCCTCCACCCTCCTCCTCGTCTGCGCCGTCGTCGGCATTGTCGCCTGCGTGACCGGTTCAAAGAACTCCGGCGACCGGTCGAAAGCACACGCCATTTTGAAGAGCACGTGCAGCAGCACGCTGTATCCCGATCTGTGCTTCTCGACCATTTCCGAACACGACGGAGCCTTGAAGAAAGTGACGAATCAGAAAGACGTTATCGAGCTTTCGATTAATATCACTGTGAAAGCTGTGGAAGAAAATTACTTTCGAGTGCAGAAATTGGCGGCGCTGAAGAATATTTCCCACAGAGAGAGAATTGCCCTTCACGATTGCCTTGAAACCATTGATGAAACGCTTGATGAGCTTCATAAAGCCATTGTGGATCTCCATGAGTATCCTAATAAGAAATCTCTTAACCAACACGCTGATGATCTTAAGACCTTGCTCAGTTCCGCCATTACTAATCAGGAGACTTGCCTTGACGGGTTTTCTCACGACGAGGCGGACAAGAACCTGCGGGACAAGCTGAAAGAGGGCCAGACCGAAGTGGAGCACATGTGCAGCAATGCACTAGCCATGATTAAGAACATGACGGATACAGACATAGCCAATTACGAGGCTAAAATGGGAACAGCCAACAGAAAGCTCAAGGAGGAGAGCAACGACCACGACGGCATCCAGTGGCCTGACTGGCTGTCGGCCGGAGACCGCCGGCTGCTGCAGTCCTCCTCCCTGACGCCGGACGTGGTCGTTGCGGCGGACGGCAGCGGGAACTTCCGGACGGTGGCAGCCGCCGTGGCCGCCGCGCCGGTGAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAACGTGGAAGTGCCGAAGAAGAAGACGAATATTATGTTTATGGGAGATGGAAGGAGTAATACTATAATTACCGGTAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGGGAAGGATTTCTAGCGCGTGACATCACGTTCCAAAACACAGCCGGTCCGTCAAAGCACCAAGCGGTGGCCCTCCGCGTCGGAGCAGATCTCTCCGCCTTCTACCAATGTGACATGTTGGCCTATCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGACTTCATCTTTGGCAACGCGGCGGCGGTTTTCCAGGACTGTGACATTCACGCGCGCAGACCAAACTCCGGTCAGAAAAACATGGTCACGGCCCAGGGTCGGTCCGACCCGAACCAGAACACCGGAATCGTGATCCAGAAATCCCGGATCGGAGCCACGTCGGATCTCCGGCCGGTCCAGAATAACTTTCCGACGTTCCTCGGAAGGCCGTGGAAGGAATATTCTAGAACCGTGATTATGCAGTCGTCGATAAGTGACGTCATTGACCCGAAGGGGTGGCATGAGTGGAGCGGTAATTTTGCCCTCAGTACTTTGTTTTACGGCGAGTATCAGAATACCGGACCGGGTGCTTCGACGGGCGGGCGAGTGACGTGGAAGGGATTTAGGGTAATTCGGAGTGCCACGGAGGCCGAGCCTTTTACTGCTGGTAAATTTATTGGCGGTGGGAGCTGGTTGCGGTCTACAGGCTTTCCTTTCTCTCTAGGGCTATAA 1779 53.29 MKETDTMEKPLAAGISNSGHQSATGKNPKNKKKLLIVALSSTLLLVCAVVGIVACVTGSKNSGDRSKAHAILKSTCSSTLYPDLCFSTISEHDGALKKVTNQKDVIELSINITVKAVEENYFRVQKLAALKNISHRERIALHDCLETIDETLDELHKAIVDLHEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQTEVEHMCSNALAMIKNMTDTDIANYEAKMGTANRKLKEESNDHDGIQWPDWLSAGDRRLLQSSSLTPDVVVAADGSGNFRTVAAAVAAAPVKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQNNFPTFLGRPWKEYSRTVIMQSSISDVIDPKGWHEWSGNFALSTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAEPFTAGKFIGGGSWLRSTGFPFSLGL 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49654900 49659009 - Maker00014747 Lcy3g2282 629474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2282 592 CDD PMEI-like_3 74 231 - -
Lcy3g2282 592 Coils Coil 235 255 - -
Lcy3g2282 592 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Lcy3g2282 592 Pfam Pectinesterase 281 577 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy3g2282 592 SUPERFAMILY Pectin lyase-like 279 591 IPR011050 -
Lcy3g2282 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 231 IPR035513 -
Lcy3g2282 592 PANTHER PECTINESTERASE 33 583 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy3g2282 592 Gene3D - 275 592 IPR012334 -
Lcy3g2282 592 FunFam Pectinesterase 275 592 - -
Lcy3g2282 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 231 IPR035513 -
Lcy3g2282 592 SMART PMEI_2 67 226 IPR006501 GO:0004857(InterPro)
Lcy3g2282 592 MobiDBLite consensus disorder prediction 1 27 - -
Lcy3g2282 592 Pfam Plant invertase/pectin methylesterase inhibitor 71 226 IPR006501 GO:0004857(InterPro)
Lcy3g2282 592 FunFam Pectinesterase 68 231 - -
Lcy3g2282 592 NCBIfam pectinesterase inhibitor domain 41 230 IPR006501 GO:0004857(InterPro)
Lcy3g2282 592 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0080 Lcy-Chr13:839035 Lcy3g2282 Lcy-Chr3:49654900 1.66E-275 dispersed
Lcy3g1356 Lcy-Chr3:40010269 Lcy3g2282 Lcy-Chr3:49654900 2.49E-215 dispersed
Lcy3g1771 Lcy-Chr3:44975720 Lcy3g2282 Lcy-Chr3:49654900 3.02E-168 dispersed
Lcy3g2282 Lcy-Chr3:49654900 Lcy6g0260 Lcy-Chr6:2261062 8.43E-152 dispersed
Lcy13g0079 Lcy-Chr13:833308 Lcy3g2282 Lcy-Chr3:49654900 1.12E-129 wgd
Lcy2g0998 Lcy-Chr2:9335387 Lcy3g2282 Lcy-Chr3:49654900 4.63E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2282 K01051 - csv:101212388 1016.14