Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2287 ATGGTCAGCTGCCTCGCCCATTTACTTTCCTCTGCTATCTTCAACTTCCTTTTCACTTTTGTCTCCGCTTCTACTCTTGTTTTCTGTGCATTTCTTCTTTACTTCCACATGATTAGATTCTCGCAGATTGCATATCTTTCCGTAGCTGTTTTCTGCGTCTATTTTGTGCGTCATTCCACACCTGCCACCATATCTTTTGCAGTACATTACAGTGATTTTTCTGAATTGGAAGATTTTTCATCTGCTTTGAGAGTTTTGTACGCCAGCTTAAACTCGCCACCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCATGTGGACAATCATGGAAGGGGATTACTTGCTCTGGCTCACGGGTTACAGAAATAAACTTATCTGGTCTCCAGCTCAGTGGATCGCTCGGATACCAGCTTGCAAGTTTGACATCGCTAACGAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCAAACCTGAAGAGCCTAAATCTTGCTCGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACCAATCTTCAATACCTAAATCTCAGTCGTAATCAGCTTCAGAATCCATTGATTGATATGTTTAGGCAGCTTACTTCACTATCCACATTGGATCTGTCTTTCAATGCTATATCAGGCGAACTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCCAATCTTCCTCTTGATAACCTGAATGTTGAAAACAACCGTTTCTCTGGCTGGATCCCTGATCAACTGAAAAGCATCAATCTGCAGAAAGATGGCAACGCCTGGAACTCAGGTCCTGCACCCCCTCCTCCACCTGGTACACCTCCAACCACCAGAAGGAACCGAAATCATAATTCTGGTGGCAATAGTCCATCAAATGGTGGTTCTGGTGAAGGTCAGAAGTCAGGAATTAGTGGTGGTGGCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCTGTAGTAGCATTCTTCCTTGTTAGGAGGAGATCCAAGAGATCATCTTCAGACATTGAAAAGCTTGACAATCAACCGCTTCAACCTCTTAAAACGACTGCACCGCAAGAAATAAAGTCTGAAGAGCCTTCCTCCACATTTTATCCAACAACATTTGAAACTTCTACTACAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCGTTTGATGAAGACGACTTTGCAAAAAGAGCCATTGTCAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAAATAGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTATCGGGCTGAATTTGATGATGGGAAGATTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCAAAAGTCTCCCAGTTACATCATCCCAATATAACTGAACTCGTGGGATATTGCTCAGAGCACGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTCTTGCATCTTTCAGATGAATACAACAAGCCACTGATATGGAATTCCCGTGTTAAGATCGCTTTGGGAACAGCACGTGCATTAGAGTATCTTCATGAAGTTTGCTCTCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTGCTGGATGCTGAACTCAGCCCTCACCTTTCTGATTCTGGACTTGAAAGCTTTGTACCAAATGCAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCCGAGGTTACCATGTCGGGCCAATATACTCTGAAAAGCGATGTCTATAGTTTCGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGTCCGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGACCCAGATCTCAATGGGCTTTATCCAGTTAAATCTCTCTCCCGATTTGCCGATGTGATTGCACTTTGCGTCCAGACCGAACCTGAATTCAGACCTCCAATGTCAGAGGTTGTCGAAGCATTGGTTCGTCTGGTGCAGCGAGCTAACATGAGTAAGAGAACGTTTGGAAATGATAATGTAGCATCTCCCAGAGGAGACACGGGCGGGGAGGGCACACCATAA 2283 43.36 MVSCLAHLLSSAIFNFLFTFVSASTLVFCAFLLYFHMIRFSQIAYLSVAVFCVYFVRHSTPATISFAVHYSDFSELEDFSSALRVLYASLNSPPQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLQLSGSLGYQLASLTSLTNLDVSNNNIGGEIVYQLPPNLKSLNLARNNFNKGIPYSISLMTNLQYLNLSRNQLQNPLIDMFRQLTSLSTLDLSFNAISGELPQSFSSLSSISTMYLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPDQLKSINLQKDGNAWNSGPAPPPPPGTPPTTRRNRNHNSGGNSPSNGGSGEGQKSGISGGGIAGIIISVLVVGAVVAFFLVRRRSKRSSSDIEKLDNQPLQPLKTTAPQEIKSEEPSSTFYPTTFETSTTINLKPPPIDRHKSFDEDDFAKRAIVKKASAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFVPNADQALDHNASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRSEQSLVRWATPQLHDIDALTKMVDPDLNGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTFGNDNVASPRGDTGGEGTP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49700726 49706447 - Maker00014789 Lcy3g2287 629479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2287 760 SMART LRR_typ_2 142 170 IPR003591 -
Lcy3g2287 760 SMART LRR_typ_2 212 235 IPR003591 -
Lcy3g2287 760 SMART LRR_typ_2 188 211 IPR003591 -
Lcy3g2287 760 Pfam Leucine Rich repeat 142 160 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 ProSitePatterns Protein kinases ATP-binding region signature. 462 485 IPR017441 GO:0005524(InterPro)
Lcy3g2287 760 Pfam Protein tyrosine and serine/threonine kinase 458 728 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2287 760 Pfam Leucine Rich Repeat 190 212 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 Pfam Leucine Rich Repeat 166 186 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 SUPERFAMILY L domain-like 85 280 - -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 307 329 - -
Lcy3g2287 760 ProSiteProfiles Protein kinase domain profile. 456 731 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2287 760 Gene3D Phosphorylase Kinase; domain 1 419 533 - -
Lcy3g2287 760 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 77 302 - -
Lcy3g2287 760 Gene3D Transferase(Phosphotransferase) domain 1 535 749 - -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 370 396 - -
Lcy3g2287 760 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 421 533 - -
Lcy3g2287 760 Pfam Leucine rich repeat N-terminal domain 81 117 IPR013210 -
Lcy3g2287 760 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 208 733 IPR046959 -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 741 760 - -
Lcy3g2287 760 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 534 742 - -
Lcy3g2287 760 Gene3D Ribonuclease Inhibitor 76 298 IPR032675 -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 285 331 - -
Lcy3g2287 760 CDD STKc_IRAK 462 731 - -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 364 396 - -
Lcy3g2287 760 SUPERFAMILY Protein kinase-like (PK-like) 439 728 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2287 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2287 Lcy-Chr3:49700726 Lcy5g1479 Lcy-Chr5:35449049 1.67E-143 dispersed
Lcy13g0086 Lcy-Chr13:874957 Lcy3g2287 Lcy-Chr3:49700726 2.45E-235 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy5g1479 . 446 739 Strubbelig Receptor Gene Family AT1G11130 53.4 6.4e-85 312.8
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy13g0086 . 149 831 Strubbelig Receptor Gene Family AT1G53730 60.9 1.7e-205 713.4
Lcy3g2287 . 60 745 Strubbelig Receptor Gene Family AT1G53730 60.9 6.1e-179 625.2
Lcy10g0819 . 5 681 Strubbelig Receptor Gene Family AT1G53730 50.7 5.5e-156 548.9
Lcy13g0086 . 157 835 Strubbelig Receptor Gene Family AT3G14350 52.3 3.8e-178 622.5
Lcy3g2287 . 80 743 Strubbelig Receptor Gene Family AT3G14350 56.8 5.7e-158 555.4
Lcy5g1479 . 394 770 Strubbelig Receptor Gene Family AT4G22130 82.0 1.4e-175 613.6
Lcy13g0086 . 519 847 Strubbelig Receptor Gene Family AT4G22130 63.7 2.9e-120 429.9
Lcy3g2287 . 438 751 Strubbelig Receptor Gene Family AT4G22130 65.8 2.1e-118 423.7
Lcy4g0624 . 369 664 Strubbelig Receptor Gene Family AT4G22130 62.0 2.4e-106 383.6
Lcy10g0819 . 350 695 Strubbelig Receptor Gene Family AT4G22130 53.1 7.5e-100 362.1
Lcy5g0631 . 360 682 Strubbelig Receptor Gene Family AT4G22130 52.9 6.1e-94 342.4
Lcy1g0371 . 418 685 Strubbelig Receptor Gene Family AT4G22130 59.3 1.7e-88 324.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65830 None None None None Lcy PK