Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2287 ATGGTCAGCTGCCTCGCCCATTTACTTTCCTCTGCTATCTTCAACTTCCTTTTCACTTTTGTCTCCGCTTCTACTCTTGTTTTCTGTGCATTTCTTCTTTACTTCCACATGATTAGATTCTCGCAGATTGCATATCTTTCCGTAGCTGTTTTCTGCGTCTATTTTGTGCGTCATTCCACACCTGCCACCATATCTTTTGCAGTACATTACAGTGATTTTTCTGAATTGGAAGATTTTTCATCTGCTTTGAGAGTTTTGTACGCCAGCTTAAACTCGCCACCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCATGTGGACAATCATGGAAGGGGATTACTTGCTCTGGCTCACGGGTTACAGAAATAAACTTATCTGGTCTCCAGCTCAGTGGATCGCTCGGATACCAGCTTGCAAGTTTGACATCGCTAACGAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCAAACCTGAAGAGCCTAAATCTTGCTCGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACCAATCTTCAATACCTAAATCTCAGTCGTAATCAGCTTCAGAATCCATTGATTGATATGTTTAGGCAGCTTACTTCACTATCCACATTGGATCTGTCTTTCAATGCTATATCAGGCGAACTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCCAATCTTCCTCTTGATAACCTGAATGTTGAAAACAACCGTTTCTCTGGCTGGATCCCTGATCAACTGAAAAGCATCAATCTGCAGAAAGATGGCAACGCCTGGAACTCAGGTCCTGCACCCCCTCCTCCACCTGGTACACCTCCAACCACCAGAAGGAACCGAAATCATAATTCTGGTGGCAATAGTCCATCAAATGGTGGTTCTGGTGAAGGTCAGAAGTCAGGAATTAGTGGTGGTGGCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCTGTAGTAGCATTCTTCCTTGTTAGGAGGAGATCCAAGAGATCATCTTCAGACATTGAAAAGCTTGACAATCAACCGCTTCAACCTCTTAAAACGACTGCACCGCAAGAAATAAAGTCTGAAGAGCCTTCCTCCACATTTTATCCAACAACATTTGAAACTTCTACTACAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCGTTTGATGAAGACGACTTTGCAAAAAGAGCCATTGTCAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAAATAGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTATCGGGCTGAATTTGATGATGGGAAGATTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCAAAAGTCTCCCAGTTACATCATCCCAATATAACTGAACTCGTGGGATATTGCTCAGAGCACGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTCTTGCATCTTTCAGATGAATACAACAAGCCACTGATATGGAATTCCCGTGTTAAGATCGCTTTGGGAACAGCACGTGCATTAGAGTATCTTCATGAAGTTTGCTCTCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTGCTGGATGCTGAACTCAGCCCTCACCTTTCTGATTCTGGACTTGAAAGCTTTGTACCAAATGCAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCCGAGGTTACCATGTCGGGCCAATATACTCTGAAAAGCGATGTCTATAGTTTCGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGTCCGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGACCCAGATCTCAATGGGCTTTATCCAGTTAAATCTCTCTCCCGATTTGCCGATGTGATTGCACTTTGCGTCCAGACCGAACCTGAATTCAGACCTCCAATGTCAGAGGTTGTCGAAGCATTGGTTCGTCTGGTGCAGCGAGCTAACATGAGTAAGAGAACGTTTGGAAATGATAATGTAGCATCTCCCAGAGGAGACACGGGCGGGGAGGGCACACCATAA 2283 43.36 MVSCLAHLLSSAIFNFLFTFVSASTLVFCAFLLYFHMIRFSQIAYLSVAVFCVYFVRHSTPATISFAVHYSDFSELEDFSSALRVLYASLNSPPQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLQLSGSLGYQLASLTSLTNLDVSNNNIGGEIVYQLPPNLKSLNLARNNFNKGIPYSISLMTNLQYLNLSRNQLQNPLIDMFRQLTSLSTLDLSFNAISGELPQSFSSLSSISTMYLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPDQLKSINLQKDGNAWNSGPAPPPPPGTPPTTRRNRNHNSGGNSPSNGGSGEGQKSGISGGGIAGIIISVLVVGAVVAFFLVRRRSKRSSSDIEKLDNQPLQPLKTTAPQEIKSEEPSSTFYPTTFETSTTINLKPPPIDRHKSFDEDDFAKRAIVKKASAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFVPNADQALDHNASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRSEQSLVRWATPQLHDIDALTKMVDPDLNGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTFGNDNVASPRGDTGGEGTP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49700726 49706447 - Maker00014789 Lcy3g2287 629479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2287 760 SMART LRR_typ_2 142 170 IPR003591 -
Lcy3g2287 760 SMART LRR_typ_2 212 235 IPR003591 -
Lcy3g2287 760 SMART LRR_typ_2 188 211 IPR003591 -
Lcy3g2287 760 Pfam Leucine Rich repeat 142 160 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 ProSitePatterns Protein kinases ATP-binding region signature. 462 485 IPR017441 GO:0005524(InterPro)
Lcy3g2287 760 Pfam Protein tyrosine and serine/threonine kinase 458 728 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2287 760 Pfam Leucine Rich Repeat 190 212 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 Pfam Leucine Rich Repeat 166 186 IPR001611 GO:0005515(InterPro)
Lcy3g2287 760 SUPERFAMILY L domain-like 85 280 - -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 307 329 - -
Lcy3g2287 760 ProSiteProfiles Protein kinase domain profile. 456 731 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2287 760 Gene3D Phosphorylase Kinase; domain 1 419 533 - -
Lcy3g2287 760 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 77 302 - -
Lcy3g2287 760 Gene3D Transferase(Phosphotransferase) domain 1 535 749 - -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 370 396 - -
Lcy3g2287 760 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 421 533 - -
Lcy3g2287 760 Pfam Leucine rich repeat N-terminal domain 81 117 IPR013210 -
Lcy3g2287 760 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 208 733 IPR046959 -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 741 760 - -
Lcy3g2287 760 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 534 742 - -
Lcy3g2287 760 Gene3D Ribonuclease Inhibitor 76 298 IPR032675 -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 285 331 - -
Lcy3g2287 760 CDD STKc_IRAK 462 731 - -
Lcy3g2287 760 MobiDBLite consensus disorder prediction 364 396 - -
Lcy3g2287 760 SUPERFAMILY Protein kinase-like (PK-like) 439 728 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2287 Lcy-Chr3:49700726 Lcy5g1479 Lcy-Chr5:35449049 1.67E-143 dispersed
Lcy13g0086 Lcy-Chr13:874957 Lcy3g2287 Lcy-Chr3:49700726 2.45E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65830 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2287 - - - 0.0