Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2302 ATGGGAAAAAGAGCCCCAAGAAAAATCCTCACAAGGTTGAGGAACCCAAAATCTAGGATACCTCCTCCCATGATGGATCACCTAGTTAGAAAGGATGGAAAGAAGGCTGACAAGGTCAATTGCATCACGACACAAGCTGCATTGGTGCTTAATGCATCTAGAAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGAAGGATGATTAGAGCCCATGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTCCTCAGTATCACCTCCAACGTCAACTGGTGACTATGCCATTAGTTTAGAACAGCTTGCTTCATTGACCCGTGATCAAAAAATTTCTTCTCTTCAACAATATGGGGGAGTTAAAGGGTTATCAAATTTATTAAAAACAAATACCGAGAAAGGAATATCAGGAGATGAAACTGATTTACTGAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAGTCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGGATTAAAACAGAGGGTGTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTGTTTCTTGTCATTATAGTCACAGCGGTTAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTTTCGATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCAATAGATGAATCTAGCATGACAGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCCCCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGACTGTTGATGGCCAGTATCTCAGAGGATACCGGGGAAGAAACTCCCTTGCAGGTTCGATTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTTCTGTGCTAGCTGTCCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGAAACCCTGAATTTCAGCGTGGGCGTACAAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATTGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTACCTGAAGGACTTCCTTTGGCTGTCACCCTCACATTGGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGTTTCTTCTTCTTCTTCCCAAAGCCCAACTAACAGAAGTTGATTTGCAGGTTCGAAGACTGTCTGCTTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGCGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATTAATCCCCCAGATGATCCACTGCAGTTACACTCATTGGTACTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTCGTGGCTAAGGATGGGAGAAGTACAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTTTGATGTTGTCAAATCAGAGTCCAAAGTTCTCCATGTTGTCCCCTTCAATTCAGAAAAGAAGCGAGGTGGTGTTGCAATAAAGCGGGTAATTGTTATGATCTTGAGCTTGGAGTGCCATGTGCCTCCTCACTGCATTTGCAGTATTGAGGCCGACTCAGAAGTTTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTATCTGGACTTGAATGGTGAAGTGCACTCGATGGAAGACAATGAGGATTATTTTAAGGCAGCTATTAGTAACATGGCTGCAAACAGTTTGCGCTGTGTTGCGATTGCATATAATTCATATGAGTTGGAGAAGGTTCCAGTAGATGAACAGCGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGCGATGGTGTTAAAGAGGCTGTGAAAGTGTGCACGGATGCAGGTGTCAAGGTGCGCATGGTCACTGGAGACAATATACAGACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCAACTGATGATGCTTCTGAGCCTACGGTAATTGAAGGAAAAGCATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCGAAAATAACGGTGATGGGGAGGTCTTCGCCTAATGACAAGCTCTTGCTTGTTCAAGCACTAAGAAAGGGAGGAGAAGTTGTTGCTGTAACTGGAGATGGAACCAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGCACTGAAGTTGCAAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTTGTGTTGATCATCTTCTCGTCAGCTTTAATACTGCAGTTTCTTCCATGTTCCTTCGTAGTTTTGAAGCTAATAACATCCAGGAAGTGAATGGTCTGCCTTACGTTATCTTTCCAAACATGAGAACATGCAAGTTGCTAAATATATGCTTTTATTGCAAAATTGACTTGCTAGTTCATAATTATACTGCTTATGCCAAGTTATGTCAACGAGATCTGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTTATCCAGTTTCAGCTCACTGTAAATGTTGCTGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTTGGTGCTCTAGCATTAGCAACTGAACCACCAACAGACCACCTGATGCATCGGTCCCCAGTTGGGCGAAGGGAACCCCTTATAACTAATATTATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTACTTCTTGTCCTTAACTTCTATGCCACTGATATTCTTCAATTGAATAATGATAGCAAGGAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCATTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAATGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACATTCGTGCTTCAGATTATCATCGTCGAATTTCTTGGAAAATTTACTTCGACAGTAAAACTTGATGGGAAGCAATGGCTTGTCTGCTTCGCAATCGGCGTTGTGAGCTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCAGAGACCCCATTGGCTAAATACTTTACAAAGCCAGTTCAACGATGCAGAAGGTCACGTGGTGCTTGA 3534 42.19 MGKRAPRKILTRLRNPKSRIPPPMMDHLVRKDGKKADKVNCITTQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGSSVSPPTSTGDYAISLEQLASLTRDQKISSLQQYGGVKGLSNLLKTNTEKGISGDETDLLKRRNAFGSNTYPRKKGRSFLRFLWEAWQDLTLVILIIAAVASLALGIKTEGVEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLGRYFTGNTHDANGNPEFQRGRTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALFLLLLPKAQLTEVDLQVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPDDPLQLHSLVLNLLYEGIAQNSTGNVFVAKDGRSTEVTGSPTEKAILSWAVKLGMKFDVVKSESKVLHVVPFNSEKKRGGVAIKRVIVMILSLECHVPPHCICSIEADSEVYIHWKGAAEMVLSSCTKYLDLNGEVHSMEDNEDYFKAAISNMAANSLRCVAIAYNSYELEKVPVDEQRLDQWDLPADDLILLAIVGIKDPCRDGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAVECGILNATDDASEPTVIEGKAFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVCVDHLLVSFNTAVSSMFLRSFEANNIQEVNGLPYVIFPNMRTCKLLNICFYCKIDLLVHNYTAYAKLCQRDLVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNNDSKEHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFVLQIIIVEFLGKFTSTVKLDGKQWLVCFAIGVVSWPLAVVGKLIPVPETPLAKYFTKPVQRCRRSRGA 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49898539 49916194 - Maker00015311 Lcy3g2302 629494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2302 1177 PRINTS P-type cation-transporting ATPase superfamily signature 298 312 - -
Lcy3g2302 1177 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Lcy3g2302 1177 PRINTS P-type cation-transporting ATPase superfamily signature 733 743 - -
Lcy3g2302 1177 PRINTS P-type cation-transporting ATPase superfamily signature 818 837 - -
Lcy3g2302 1177 PRINTS P-type cation-transporting ATPase superfamily signature 711 722 - -
Lcy3g2302 1177 PRINTS P-type cation-transporting ATPase superfamily signature 842 854 - -
Lcy3g2302 1177 Gene3D - 500 718 IPR023299 GO:0000166(InterPro)
Lcy3g2302 1177 SMART Cation_ATPase_N_a_2 130 204 IPR004014 -
Lcy3g2302 1177 Gene3D - 936 1157 - -
Lcy3g2302 1177 SFLD p-type atpase 474 866 IPR044492 -
Lcy3g2302 1177 Gene3D - 44 90 - -
Lcy3g2302 1177 FunFam Calcium-transporting ATPase 182 239 - -
Lcy3g2302 1177 FunFam Calcium-transporting ATPase 710 863 - -
Lcy3g2302 1177 Gene3D - 155 350 - -
Lcy3g2302 1177 PANTHER CATION TRANSPORTING ATPASE 937 1155 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lcy3g2302 1177 SUPERFAMILY HAD-like 488 865 IPR036412 -
Lcy3g2302 1177 SUPERFAMILY Calcium ATPase, transmembrane domain M 131 1155 IPR023298 -
Lcy3g2302 1177 ProSitePatterns E1-E2 ATPases phosphorylation site. 492 498 IPR018303 -
Lcy3g2302 1177 Pfam E1-E2 ATPase 250 452 - -
Lcy3g2302 1177 SFLD C1.7: P-type atpase like 474 866 - -
Lcy3g2302 1177 Pfam Ca2+-ATPase N terminal autoinhibitory domain 44 67 IPR024750 GO:0005516(InterPro)
Lcy3g2302 1177 NCBIfam HAD-IC family P-type ATPase 785 866 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy3g2302 1177 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 715 IPR023299 GO:0000166(InterPro)
Lcy3g2302 1177 Pfam haloacid dehalogenase-like hydrolase 488 832 - -
Lcy3g2302 1177 Pfam Cation transporter/ATPase, N-terminus 131 199 IPR004014 -
Lcy3g2302 1177 FunFam Calcium-transporting ATPase 500 718 - -
Lcy3g2302 1177 FunFam Calcium-transporting ATPase 919 1157 - -
Lcy3g2302 1177 FunFam Calcium-transporting ATPase 44 91 - -
Lcy3g2302 1177 Gene3D - 182 486 - -
Lcy3g2302 1177 Pfam Cation transporting ATPase, C-terminus 976 1152 IPR006068 -
Lcy3g2302 1177 SUPERFAMILY Calcium ATPase, transduction domain A 251 347 IPR008250 -
Lcy3g2302 1177 Gene3D - 487 863 IPR023214 -
Lcy3g2302 1177 FunFam Calcium-transporting ATPase 229 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2302 Lcy-Chr3:49898539 Lcy4g1594 Lcy-Chr4:40186691 0 dispersed
Lcy3g2302 Lcy-Chr3:49898539 Lcy1g0909 Lcy-Chr1:7934281 1.17E-270 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2302 K01537 - csv:101214801 1322.38