Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy3g2302 | ATGGGAAAAAGAGCCCCAAGAAAAATCCTCACAAGGTTGAGGAACCCAAAATCTAGGATACCTCCTCCCATGATGGATCACCTAGTTAGAAAGGATGGAAAGAAGGCTGACAAGGTCAATTGCATCACGACACAAGCTGCATTGGTGCTTAATGCATCTAGAAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGAAGGATGATTAGAGCCCATGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTCCTCAGTATCACCTCCAACGTCAACTGGTGACTATGCCATTAGTTTAGAACAGCTTGCTTCATTGACCCGTGATCAAAAAATTTCTTCTCTTCAACAATATGGGGGAGTTAAAGGGTTATCAAATTTATTAAAAACAAATACCGAGAAAGGAATATCAGGAGATGAAACTGATTTACTGAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAGTCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGGATTAAAACAGAGGGTGTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTGTTTCTTGTCATTATAGTCACAGCGGTTAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTTTCGATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCAATAGATGAATCTAGCATGACAGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCCCCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGACTGTTGATGGCCAGTATCTCAGAGGATACCGGGGAAGAAACTCCCTTGCAGGTTCGATTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTTCTGTGCTAGCTGTCCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGAAACCCTGAATTTCAGCGTGGGCGTACAAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATTGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTACCTGAAGGACTTCCTTTGGCTGTCACCCTCACATTGGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGTTTCTTCTTCTTCTTCCCAAAGCCCAACTAACAGAAGTTGATTTGCAGGTTCGAAGACTGTCTGCTTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGCGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATTAATCCCCCAGATGATCCACTGCAGTTACACTCATTGGTACTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTCGTGGCTAAGGATGGGAGAAGTACAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTTTGATGTTGTCAAATCAGAGTCCAAAGTTCTCCATGTTGTCCCCTTCAATTCAGAAAAGAAGCGAGGTGGTGTTGCAATAAAGCGGGTAATTGTTATGATCTTGAGCTTGGAGTGCCATGTGCCTCCTCACTGCATTTGCAGTATTGAGGCCGACTCAGAAGTTTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTATCTGGACTTGAATGGTGAAGTGCACTCGATGGAAGACAATGAGGATTATTTTAAGGCAGCTATTAGTAACATGGCTGCAAACAGTTTGCGCTGTGTTGCGATTGCATATAATTCATATGAGTTGGAGAAGGTTCCAGTAGATGAACAGCGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGCGATGGTGTTAAAGAGGCTGTGAAAGTGTGCACGGATGCAGGTGTCAAGGTGCGCATGGTCACTGGAGACAATATACAGACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCAACTGATGATGCTTCTGAGCCTACGGTAATTGAAGGAAAAGCATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCGAAAATAACGGTGATGGGGAGGTCTTCGCCTAATGACAAGCTCTTGCTTGTTCAAGCACTAAGAAAGGGAGGAGAAGTTGTTGCTGTAACTGGAGATGGAACCAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGCACTGAAGTTGCAAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTTGTGTTGATCATCTTCTCGTCAGCTTTAATACTGCAGTTTCTTCCATGTTCCTTCGTAGTTTTGAAGCTAATAACATCCAGGAAGTGAATGGTCTGCCTTACGTTATCTTTCCAAACATGAGAACATGCAAGTTGCTAAATATATGCTTTTATTGCAAAATTGACTTGCTAGTTCATAATTATACTGCTTATGCCAAGTTATGTCAACGAGATCTGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTTATCCAGTTTCAGCTCACTGTAAATGTTGCTGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTTGGTGCTCTAGCATTAGCAACTGAACCACCAACAGACCACCTGATGCATCGGTCCCCAGTTGGGCGAAGGGAACCCCTTATAACTAATATTATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTACTTCTTGTCCTTAACTTCTATGCCACTGATATTCTTCAATTGAATAATGATAGCAAGGAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCATTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAATGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACATTCGTGCTTCAGATTATCATCGTCGAATTTCTTGGAAAATTTACTTCGACAGTAAAACTTGATGGGAAGCAATGGCTTGTCTGCTTCGCAATCGGCGTTGTGAGCTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCAGAGACCCCATTGGCTAAATACTTTACAAAGCCAGTTCAACGATGCAGAAGGTCACGTGGTGCTTGA | 3534 | 42.19 | MGKRAPRKILTRLRNPKSRIPPPMMDHLVRKDGKKADKVNCITTQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGSSVSPPTSTGDYAISLEQLASLTRDQKISSLQQYGGVKGLSNLLKTNTEKGISGDETDLLKRRNAFGSNTYPRKKGRSFLRFLWEAWQDLTLVILIIAAVASLALGIKTEGVEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLGRYFTGNTHDANGNPEFQRGRTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALFLLLLPKAQLTEVDLQVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPDDPLQLHSLVLNLLYEGIAQNSTGNVFVAKDGRSTEVTGSPTEKAILSWAVKLGMKFDVVKSESKVLHVVPFNSEKKRGGVAIKRVIVMILSLECHVPPHCICSIEADSEVYIHWKGAAEMVLSSCTKYLDLNGEVHSMEDNEDYFKAAISNMAANSLRCVAIAYNSYELEKVPVDEQRLDQWDLPADDLILLAIVGIKDPCRDGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAVECGILNATDDASEPTVIEGKAFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVCVDHLLVSFNTAVSSMFLRSFEANNIQEVNGLPYVIFPNMRTCKLLNICFYCKIDLLVHNYTAYAKLCQRDLVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNNDSKEHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFVLQIIIVEFLGKFTSTVKLDGKQWLVCFAIGVVSWPLAVVGKLIPVPETPLAKYFTKPVQRCRRSRGA | 1177 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 49898539 | 49916194 | - | Maker00015311 | Lcy3g2302 | 629494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy3g2302 | 1177 | PRINTS | P-type cation-transporting ATPase superfamily signature | 298 | 312 | - | - | |
Lcy3g2302 | 1177 | PRINTS | P-type cation-transporting ATPase superfamily signature | 490 | 504 | - | - | |
Lcy3g2302 | 1177 | PRINTS | P-type cation-transporting ATPase superfamily signature | 733 | 743 | - | - | |
Lcy3g2302 | 1177 | PRINTS | P-type cation-transporting ATPase superfamily signature | 818 | 837 | - | - | |
Lcy3g2302 | 1177 | PRINTS | P-type cation-transporting ATPase superfamily signature | 711 | 722 | - | - | |
Lcy3g2302 | 1177 | PRINTS | P-type cation-transporting ATPase superfamily signature | 842 | 854 | - | - | |
Lcy3g2302 | 1177 | Gene3D | - | 500 | 718 | IPR023299 | GO:0000166(InterPro) | |
Lcy3g2302 | 1177 | SMART | Cation_ATPase_N_a_2 | 130 | 204 | IPR004014 | - | |
Lcy3g2302 | 1177 | Gene3D | - | 936 | 1157 | - | - | |
Lcy3g2302 | 1177 | SFLD | p-type atpase | 474 | 866 | IPR044492 | - | |
Lcy3g2302 | 1177 | Gene3D | - | 44 | 90 | - | - | |
Lcy3g2302 | 1177 | FunFam | Calcium-transporting ATPase | 182 | 239 | - | - | |
Lcy3g2302 | 1177 | FunFam | Calcium-transporting ATPase | 710 | 863 | - | - | |
Lcy3g2302 | 1177 | Gene3D | - | 155 | 350 | - | - | |
Lcy3g2302 | 1177 | PANTHER | CATION TRANSPORTING ATPASE | 937 | 1155 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
Lcy3g2302 | 1177 | SUPERFAMILY | HAD-like | 488 | 865 | IPR036412 | - | |
Lcy3g2302 | 1177 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 131 | 1155 | IPR023298 | - | |
Lcy3g2302 | 1177 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 492 | 498 | IPR018303 | - | |
Lcy3g2302 | 1177 | Pfam | E1-E2 ATPase | 250 | 452 | - | - | |
Lcy3g2302 | 1177 | SFLD | C1.7: P-type atpase like | 474 | 866 | - | - | |
Lcy3g2302 | 1177 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 44 | 67 | IPR024750 | GO:0005516(InterPro) | |
Lcy3g2302 | 1177 | NCBIfam | HAD-IC family P-type ATPase | 785 | 866 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy3g2302 | 1177 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 497 | 715 | IPR023299 | GO:0000166(InterPro) | |
Lcy3g2302 | 1177 | Pfam | haloacid dehalogenase-like hydrolase | 488 | 832 | - | - | |
Lcy3g2302 | 1177 | Pfam | Cation transporter/ATPase, N-terminus | 131 | 199 | IPR004014 | - | |
Lcy3g2302 | 1177 | FunFam | Calcium-transporting ATPase | 500 | 718 | - | - | |
Lcy3g2302 | 1177 | FunFam | Calcium-transporting ATPase | 919 | 1157 | - | - | |
Lcy3g2302 | 1177 | FunFam | Calcium-transporting ATPase | 44 | 91 | - | - | |
Lcy3g2302 | 1177 | Gene3D | - | 182 | 486 | - | - | |
Lcy3g2302 | 1177 | Pfam | Cation transporting ATPase, C-terminus | 976 | 1152 | IPR006068 | - | |
Lcy3g2302 | 1177 | SUPERFAMILY | Calcium ATPase, transduction domain A | 251 | 347 | IPR008250 | - | |
Lcy3g2302 | 1177 | Gene3D | - | 487 | 863 | IPR023214 | - | |
Lcy3g2302 | 1177 | FunFam | Calcium-transporting ATPase | 229 | 350 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g2302 | Lcy-Chr3:49898539 | Lcy4g1594 | Lcy-Chr4:40186691 | 0 | dispersed | |
Lcy3g2302 | Lcy-Chr3:49898539 | Lcy1g0909 | Lcy-Chr1:7934281 | 1.17E-270 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy3g2302 | K01537 | - | csv:101214801 | 1322.38 |