Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy3g2308 | ATGGACGGTATTCATGCAAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGAGCAGGAACATCATGACTTGCACTATATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAACGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGCGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCCTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCTGTTTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGCGTTCCCTCAATTCCAATAACTAATCAACAAAACGATAGGCATCTCACTGATGAAGCATTTGACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGAGAGCTGGAGCACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATCAGTGAGAAGTCTACACCAATGATGCGCCGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGTAACAAACATTAACATATTCTAA | 819 | 44.81 | MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFDQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKVTNINIF | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 49960572 | 49966546 | + | Maker00014107 | Lcy3g2308 | 629500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy3g2308 | 272 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy3g2308 | 272 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 28 | 266 | IPR045280 | GO:0006355(InterPro) | |
Lcy3g2308 | 272 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Lcy3g2308 | 272 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Lcy3g2308 | 272 | Gene3D | - | 221 | 271 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lcy3g2308 | 272 | Pfam | GATA zinc finger | 231 | 265 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy3g2308 | 272 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Lcy3g2308 | 272 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 268 | - | - | |
Lcy3g2308 | 272 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Lcy3g2308 | 272 | MobiDBLite | consensus disorder prediction | 190 | 223 | - | - | |
Lcy3g2308 | 272 | SMART | GATA_3 | 225 | 270 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy3g2308 | 272 | CDD | ZnF_GATA | 231 | 265 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy3g2308 | 272 | SMART | tify_2 | 78 | 113 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g2308 | Lcy-Chr3:49960572 | Lcy4g0098 | Lcy-Chr4:1372254 | 9.44E-61 | dispersed | |
Lcy3g2308 | Lcy-Chr3:49960572 | Lcy5g2527 | Lcy-Chr5:48076697 | 2.75E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19914 | None | None | None | None | Lcy | TF |
Pathway information
