Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2308 ATGGACGGTATTCATGCAAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGAGCAGGAACATCATGACTTGCACTATATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAACGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGCGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCCTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCTGTTTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGCGTTCCCTCAATTCCAATAACTAATCAACAAAACGATAGGCATCTCACTGATGAAGCATTTGACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGAGAGCTGGAGCACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATCAGTGAGAAGTCTACACCAATGATGCGCCGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGTAACAAACATTAACATATTCTAA 819 44.81 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFDQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKVTNINIF 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49960572 49966546 + Maker00014107 Lcy3g2308 629500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2308 272 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 PANTHER GATA TRANSCRIPTION FACTOR 28 28 266 IPR045280 GO:0006355(InterPro)
Lcy3g2308 272 Pfam tify domain 84 112 IPR010399 -
Lcy3g2308 272 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Lcy3g2308 272 Gene3D - 221 271 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy3g2308 272 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lcy3g2308 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 268 - -
Lcy3g2308 272 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Lcy3g2308 272 MobiDBLite consensus disorder prediction 190 223 - -
Lcy3g2308 272 SMART GATA_3 225 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 CDD ZnF_GATA 231 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 SMART tify_2 78 113 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2308 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2308 Lcy-Chr3:49960572 Lcy4g0098 Lcy-Chr4:1372254 9.44E-61 dispersed
Lcy3g2308 Lcy-Chr3:49960572 Lcy5g2527 Lcy-Chr5:48076697 2.75E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g0311 . 1 186 Tify Gene Family AT4G14713 51.0 1.8e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19914 None None None None Lcy TF