Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2308 ATGGACGGTATTCATGCAAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGAGCAGGAACATCATGACTTGCACTATATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAACGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGCGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCCTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCTGTTTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGCGTTCCCTCAATTCCAATAACTAATCAACAAAACGATAGGCATCTCACTGATGAAGCATTTGACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGAGAGCTGGAGCACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATCAGTGAGAAGTCTACACCAATGATGCGCCGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGTAACAAACATTAACATATTCTAA 819 44.81 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFDQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKVTNINIF 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49960572 49966546 + Maker00014107 Lcy3g2308 629500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2308 272 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 PANTHER GATA TRANSCRIPTION FACTOR 28 28 266 IPR045280 GO:0006355(InterPro)
Lcy3g2308 272 Pfam tify domain 84 112 IPR010399 -
Lcy3g2308 272 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Lcy3g2308 272 Gene3D - 221 271 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy3g2308 272 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lcy3g2308 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 268 - -
Lcy3g2308 272 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Lcy3g2308 272 MobiDBLite consensus disorder prediction 190 223 - -
Lcy3g2308 272 SMART GATA_3 225 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 CDD ZnF_GATA 231 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g2308 272 SMART tify_2 78 113 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2308 Lcy-Chr3:49960572 Lcy4g0098 Lcy-Chr4:1372254 9.44E-61 dispersed
Lcy3g2308 Lcy-Chr3:49960572 Lcy5g2527 Lcy-Chr5:48076697 2.75E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19914 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2308 - - - 0.0