Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2313 ATGCCGTCCGTCTATGGAGCTCGGTTGACCACCTTTGAAGATTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGAATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTTATCGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTAGGAAATATATTTGACGGCATTCAGAGGCCATTGAAAACAATTGCGAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCGGCACTTGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTGTATGCTACTGTCTACGAGAATAGTCTAATGGAGCACCATATTGCACTTCCTCCCGATTCTATGGGGAAAATTACCTATGTTGCACCACCTGGTCAATATTCACTTAAGGATACTGTTTTGGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCTAAACTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCCCTCTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCGTTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTAATGGATTTTCCTCAATTGACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCTGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCGGGACGACTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGGAAAGTGAAATGTCTTGGTGGGCCGGAACGAACTGGTAGTGTTACCATTGTTGGTGCAGTTTCTCCACCAGGAGGAGATTTCTCTGATCCGGTGACATCTGCTACCCTCAGTATAGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCATCTGTAAACTGGCTGATTTCATACTCAAAATACTCTACTGCATTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATTAATATCAGGACGAAGGCTCGAGAAGTTCTCCAGAGGGAAGATGACCTCAATGAGATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTATAATTTAGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAAAAGTTCGAGGATCCAGCTGAAGGTGAAGCAGTTCTTATTGAGAAATTTAAGAAGTTACATGAGGATCTGACAAATGGTTTCCGGGCTCTCGAGGATGAAACTCGGTAG 1872 44.34 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVYENSLMEHHIALPPDSMGKITYVAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAVLIEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 49992297 50002025 - Maker00014121 Lcy3g2313 629505

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2313 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Lcy3g2313 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy3g2313 623 Coils Coil 601 621 - -
Lcy3g2313 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Lcy3g2313 623 Gene3D - 134 205 - -
Lcy3g2313 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Lcy3g2313 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Lcy3g2313 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Lcy3g2313 623 Gene3D - 20 89 IPR023366 -
Lcy3g2313 623 FunFam V-type proton ATPase catalytic subunit A 194 457 - -
Lcy3g2313 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Lcy3g2313 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Lcy3g2313 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Lcy3g2313 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Lcy3g2313 623 Gene3D - 459 611 IPR024034 -
Lcy3g2313 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Lcy3g2313 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Lcy3g2313 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Lcy3g2313 623 CDD V_A-ATPase_A 88 460 - -
Lcy3g2313 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Lcy3g2313 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Lcy3g2313 623 Gene3D - 91 457 IPR027417 -
Lcy3g2313 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2313 K02145 - - csv:101216234 1207.2
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g2145 . 9 912 Primary Pumps ATPases(2) AT1G10130 72.7 0.0e+00 1250.7
Lcy13g2144 . 20 157 Primary Pumps ATPases(2) AT1G10130 86.2 6.7e-59 226.9
Lcy3g0992 . 135 978 Primary Pumps ATPases(2) AT2G28520 56.5 6.3e-265 911.0
Lcy13g1938 . 1 898 Primary Pumps ATPases(2) AT2G28520 52.3 2.0e-255 879.4
Lcy8g1870 . 1 432 Primary Pumps ATPases(2) AT2G28520 71.5 8.7e-174 608.2
Lcy3g0992 . 135 984 Primary Pumps ATPases(2) AT2G21410 69.2 0.0e+00 1132.9
Lcy13g1938 . 1 904 Primary Pumps ATPases(2) AT2G21410 59.1 5.3e-304 1040.8
Lcy8g1870 . 9 432 Primary Pumps ATPases(2) AT2G21410 50.2 3.5e-114 410.2
Lcy3g0992 . 135 984 Primary Pumps ATPases(2) AT4G39080 70.1 0.0e+00 1140.9
Lcy13g1938 . 1 904 Primary Pumps ATPases(2) AT4G39080 59.9 4.9e-302 1034.2
Lcy8g1870 . 9 432 Primary Pumps ATPases(2) AT4G39080 51.4 6.0e-114 409.5
Lcy9g1569 . 40 179 Primary Pumps ATPases(2) AT4G34720 99.3 3.9e-61 231.5
Lcy13g1930 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.6
Lcy13g1930 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 1.9e-66 249.6
Lcy9g1569 . 36 179 Primary Pumps ATPases(2) AT1G75630 77.5 4.9e-54 208.4
Lcy13g1930 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.8e-73 272.7
Lcy9g1569 . 36 179 Primary Pumps ATPases(2) AT2G16510 97.2 5.8e-61 231.1
Lcy13g1930 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.3e-52 200.7
Lcy9g1569 . 36 135 Primary Pumps ATPases(2) AT1G19910 96.0 8.0e-39 157.1
Lcy9g1819 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.7e-71 266.5
Lcy13g1750 . 1 180 Primary Pumps ATPases(2) AT2G25610 85.6 3.0e-71 265.8
Lcy9g1569 . 41 179 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 228.0
Lcy13g1930 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 228.0
Lcy9g1819 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.7 1.1e-75 280.4
Lcy13g1750 . 1 180 Primary Pumps ATPases(2) AT4G32530 72.9 4.7e-71 265.0
Lcy11g0222 . 1 1066 Primary Pumps ATPases(2) AT1G07810 81.2 0.0e+00 1684.8
Lcy11g0222 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.9 0.0e+00 1682.5
Lcy13g2145 . 9 912 Primary Pumps ATPases(2) AT1G10130 72.7 0.0e+00 1250.7
Lcy13g2144 . 20 157 Primary Pumps ATPases(2) AT1G10130 86.2 6.7e-59 226.9
Lcy11g0222 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1329.3
Lcy6g1047 . 1 179 Primary Pumps ATPases(2) AT4G02620 58.1 5.2e-49 191.0
Lcy2g1678 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 7.3e-269 923.3
Lcy2g1657 . 9 489 Primary Pumps ATPases(2) AT1G76030 96.7 2.1e-268 921.8
Lcy3g0877 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.8
Lcy10g1081 . 1 343 Primary Pumps ATPases(2) AT1G12840 85.1 9.6e-168 587.0
Lcy8g0673 . 1 262 Primary Pumps ATPases(2) AT3G58730 81.7 2.0e-116 416.0
Lcy1g1194 . 3 455 Primary Pumps ATPases(2) AT3G42050 80.1 5.0e-208 721.1
Lcy13g1930 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.8e-73 272.7
Lcy9g1569 . 36 179 Primary Pumps ATPases(2) AT2G16510 97.2 5.8e-61 231.1
Lcy2g1678 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.9 1.8e-270 928.7
Lcy2g1657 . 6 489 Primary Pumps ATPases(2) AT4G38510 96.3 1.9e-269 925.2
Lcy3g0877 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 3.3e-269 924.5
Lcy10g0065 . 1 176 Primary Pumps ATPases(2) AT1G64200 76.5 9.2e-66 247.3
Lcy2g1657 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 1.5e-266 915.6
Lcy2g1678 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 1.5e-266 915.6
Lcy3g0877 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 4.4e-266 914.1
Lcy3g0992 . 135 978 Primary Pumps ATPases(2) AT2G28520 56.5 6.3e-265 911.0
Lcy13g1938 . 1 898 Primary Pumps ATPases(2) AT2G28520 52.3 2.0e-255 879.4
Lcy8g1870 . 1 432 Primary Pumps ATPases(2) AT2G28520 71.5 8.7e-174 608.2
Lcy10g0408 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 6.7e-192 667.2
Lcy10g0065 . 1 223 Primary Pumps ATPases(2) AT4G11150 75.4 6.2e-85 311.2
Lcy3g2313 . 1 624 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1176.0
Lcy2g1678 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 7.3e-269 923.3
Lcy2g1657 . 9 489 Primary Pumps ATPases(2) AT1G76030 96.7 2.1e-268 921.8
Lcy3g0877 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.8
Lcy2g1678 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.9 1.8e-270 928.7
Lcy2g1657 . 6 489 Primary Pumps ATPases(2) AT4G38510 96.3 1.9e-269 925.2
Lcy3g0877 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 3.3e-269 924.5
Lcy2g1657 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 1.5e-266 915.6
Lcy2g1678 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 1.5e-266 915.6
Lcy3g0877 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 4.4e-266 914.1
Lcy10g1081 . 1 343 Primary Pumps ATPases(2) AT1G12840 85.1 9.6e-168 587.0
Lcy8g0673 . 1 262 Primary Pumps ATPases(2) AT3G58730 81.7 2.0e-116 416.0
Lcy10g0065 . 1 223 Primary Pumps ATPases(2) AT4G11150 75.4 6.2e-85 311.2
Lcy10g0065 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 1.0e-74 277.3
Lcy10g0065 . 1 176 Primary Pumps ATPases(2) AT1G64200 76.5 9.2e-66 247.3
Lcy6g1047 . 1 179 Primary Pumps ATPases(2) AT4G02620 58.1 5.2e-49 191.0
Lcy1g1194 . 3 455 Primary Pumps ATPases(2) AT3G42050 80.1 5.0e-208 721.1
Lcy3g0992 . 135 978 Primary Pumps ATPases(2) AT2G28520 56.5 6.3e-265 911.0
Lcy13g1938 . 1 898 Primary Pumps ATPases(2) AT2G28520 52.3 2.0e-255 879.4
Lcy8g1870 . 1 432 Primary Pumps ATPases(2) AT2G28520 71.5 8.7e-174 608.2
Lcy3g0992 . 135 984 Primary Pumps ATPases(2) AT2G21410 69.2 0.0e+00 1132.9
Lcy13g1938 . 1 904 Primary Pumps ATPases(2) AT2G21410 59.1 5.3e-304 1040.8
Lcy8g1870 . 9 432 Primary Pumps ATPases(2) AT2G21410 50.2 3.5e-114 410.2
Lcy3g0992 . 135 984 Primary Pumps ATPases(2) AT4G39080 70.1 0.0e+00 1140.9
Lcy13g1938 . 1 904 Primary Pumps ATPases(2) AT4G39080 59.9 4.9e-302 1034.2
Lcy8g1870 . 9 432 Primary Pumps ATPases(2) AT4G39080 51.4 6.0e-114 409.5
Lcy9g1569 . 40 179 Primary Pumps ATPases(2) AT4G34720 99.3 3.9e-61 231.5
Lcy13g1930 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.6
Lcy13g1930 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.3e-52 200.7
Lcy9g1569 . 36 135 Primary Pumps ATPases(2) AT1G19910 96.0 8.0e-39 157.1
Lcy9g1569 . 41 179 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 228.0
Lcy13g1930 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 228.0
Lcy13g1930 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 1.9e-66 249.6
Lcy9g1569 . 36 179 Primary Pumps ATPases(2) AT1G75630 77.5 4.9e-54 208.4
Lcy13g1930 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.8e-73 272.7
Lcy9g1569 . 36 179 Primary Pumps ATPases(2) AT2G16510 97.2 5.8e-61 231.1
Lcy9g1819 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.7 1.1e-75 280.4
Lcy13g1750 . 1 180 Primary Pumps ATPases(2) AT4G32530 72.9 4.7e-71 265.0
Lcy9g1819 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.7e-71 266.5
Lcy13g1750 . 1 180 Primary Pumps ATPases(2) AT2G25610 85.6 3.0e-71 265.8
Lcy10g0408 . 1 352 Primary Pumps ATPases(2) AT3G28710 94.3 5.7e-199 690.6
Lcy10g0408 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 6.7e-192 667.2
Lcy11g0222 . 1 1066 Primary Pumps ATPases(2) AT1G07810 81.2 0.0e+00 1684.8
Lcy11g0222 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1329.3
Lcy13g2145 . 9 912 Primary Pumps ATPases(2) AT1G10130 72.7 0.0e+00 1250.7
Lcy13g2144 . 20 157 Primary Pumps ATPases(2) AT1G10130 86.2 6.7e-59 226.9
Lcy11g0222 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.9 0.0e+00 1682.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37