Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2327 ATGCAGAACCTTCCGGTGGCGCGTGTGGCTCACGCGCGGTGTTTTCCAACAATCGGCGACAGCGCTCCTGCTCTCCTGACGGCGGCGCTCCTTCCTAGGGGTGGAAATGGAAAGGATGCTATACAGAATTTGGCTTCTTGGTGGAGTGCAAACCAGGGTGATTCTTTTTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATTTATACTAAAGCTGCTGATGTTGGAGCAGACCTCGTTGGAAAAGTTGAGCAGGGGATACCGGAGGATGATCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGCGACTGTGCTGCTCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCGGAAATCATTAGTGCCATGATACTTGGGGGAACAATGGCTCAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTGTTTCCGCTAGTAGTACACTCCTTTGATCTGGTAATTTCATCGATTGGCATTCTCTCTATCAGGAGGGGTACTCGTGAATCTGGTGTGAAGAGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATATTCTGTCACTATCATTTTGGCTGTTCTAACATTTGGTGTGTCTACCCGGTGGTTGCTTCACACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTTCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACGAACATTATTGCTGGAGTCAGCTTGGGCCTGGAATCAACAGCGCTCCCTGTTCTTGTTATTAGTGTATCTATTGTTTCGGCATTCTGGTTGGGTCACACATCAGGACTTGTGGATGGAGCTGGAAATCCAACAGGTGGGCTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTTGCATCCTTCCTACTTTTTAGTGCTTATATGGACGAGGTAGCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTTATTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAGTATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATTATTTCTCCTATGTTAGTTGGTGGGTTTATTTGCTCATATTTTTGGAAATCCTTTGATTTGTGTCTGCTTAATACTGTCGTTCGCATGTTGCCTACTTCAGGGAGAAAGTGGAAGCAGTTGAATTTGCATAATATTGAGGTTATAGTAGTATTTAACTTCTAA 1668 45.08 MQNLPVARVAHARCFPTIGDSAPALLTAALLPRGGNGKDAIQNLASWWSANQGDSFLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKSPIEDPMTILQRGYSVTIILAVLTFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGHTSGLVDGAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVAAFAHEPFKQVDIAIPEVFIGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMLVGGFICSYFWKSFDLCLLNTVVRMLPTSGRKWKQLNLHNIEVIVVFNF 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 50134063 50143941 - Maker00014380 Lcy3g2327 629519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2327 555 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 56 514 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy3g2327 555 Pfam Inorganic H+ pyrophosphatase 55 512 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lcy3g2327 555 PIRSF H+-PPtase 40 533 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2327 Lcy-Chr3:50134063 Lcy6g2388 Lcy-Chr6:48686649 0 dispersed
Lcy3g2327 Lcy-Chr3:50134063 Lcy7g1861 Lcy-Chr7:42089628 7.23E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2327 K23025 - csv:101217198 838.565