Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0011 ATGCCAGCTCTAAGAATTCTGTCTGATTGCTGGCCTTTTATACCATATGTGATGGAGTTGGTGGCAAATTTCAGATCTTTTTGTGCTGGTTCTCGTACTGCATTCTTACTGCCAATTATTACTGAAATTTCTCACGCAGCCGTACTCTTTATGGATGAGTCTGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTCCCCCACCAAAGAGGAGATAGAGCTTCTCAAGGATAAACTTGGAATGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTAGAGTCGAAGTTAAGAGTGTTCTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTTGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAAGAACTGCTAGGGTTAGTCTTGAAGGTTTAGGATTGCTTTATGAGTTCCATAGATCTGTTGTCACTCCGATAGGTGTGATAGGATCTTTTGCAGTTGCTGTACAATTGCTGCCAAGTGATGACCGACAAAGGTGTTCTCAACCCAATTTCTGTACTTTTGAATATGGTTTTGGGGTCATTTTAAGGAGAGAAAGCGTTTTTGAACTTCACCACATCCATGGCTACATCCCAGTTTTGTGGTATTCATCACATCCATGGTATGGAAGCTCTGGTCTGCCTCTCATTAAATATTGA 753 39.84 MPALRILSDCWPFIPYVMELVANFRSFCAGSRTAFLLPIITEISHAAVLFMDESVLDVDQVENLIKFSPTKEEIELLKDKLGMCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFRKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQRTARVSLEGLGLLYEFHRSVVTPIGVIGSFAVAVQLLPSDDRQRCSQPNFCTFEYGFGVILRRESVFELHHIHGYIPVLWYSSHPWYGSSGLPLIKY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 196884 200531 - Maker00009371 Lcy4g0011 629537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0011 250 Gene3D Formin, FH2 domain 37 167 IPR042201 -
Lcy4g0011 250 SUPERFAMILY Formin homology 2 domain (FH2 domain) 46 163 - -
Lcy4g0011 250 Pfam Formin Homology 2 Domain 46 157 IPR015425 -
Lcy4g0011 250 PANTHER FORMIN-J 46 163 IPR051144 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0011 K28090 - - csv:101221127 196.052
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0011 Lcy-Chr4:196884 Lcy9g0003 Lcy-Chr9:97149 4.54E-153 dispersed
Lcy4g0006 Lcy-Chr4:118008 Lcy4g0011 Lcy-Chr4:196884 3.60E-08 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g1391 . 441 955 FH2 protein (formin) Gene Family AT3G25500 62.4 1.3e-161 568.2
Lcy8g0729 . 473 895 FH2 protein (formin) Gene Family AT3G25500 63.3 3.3e-141 500.4
Lcy2g2127 . 492 893 FH2 protein (formin) Gene Family AT3G25500 51.2 1.2e-103 375.6
Lcy12g2003 . 613 1092 FH2 protein (formin) Gene Family AT2G43800 58.1 9.0e-140 495.4
Lcy8g0729 . 473 911 FH2 protein (formin) Gene Family AT2G43800 54.6 4.1e-124 443.4
Lcy9g1230 . 460 609 FH2 protein (formin) Gene Family AT4G15200 64.9 2.1e-47 187.6
Lcy9g1230 . 464 900 FH2 protein (formin) Gene Family AT5G54650 68.9 5.1e-167 585.9
Lcy8g1463 . 1 347 FH2 protein (formin) Gene Family AT5G54650 61.5 1.0e-114 412.1
Lcy8g0729 . 29 914 FH2 protein (formin) Gene Family AT5G67470 56.9 3.7e-234 808.9
Lcy12g2003 . 605 1092 FH2 protein (formin) Gene Family AT5G67470 56.1 1.9e-129 461.1
Lcy7g1391 . 489 951 FH2 protein (formin) Gene Family AT5G67470 58.8 1.6e-128 458.0
Lcy2g2127 . 495 895 FH2 protein (formin) Gene Family AT5G67470 51.6 1.5e-105 381.7
Lcy7g0217 . 385 864 FH2 protein (formin) Gene Family AT1G59910 51.3 1.9e-124 444.5
Lcy8g0729 . 497 872 FH2 protein (formin) Gene Family AT5G48360 50.5 4.4e-90 330.1
Lcy9g1230 . 472 883 FH2 protein (formin) Gene Family AT3G05470 51.2 3.8e-106 383.6
Lcy8g0729 . 477 871 FH2 protein (formin) Gene Family AT3G05470 51.6 3.2e-105 380.6
Lcy12g1998 . 946 1257 FH2 protein (formin) Gene Family AT1G42980 50.5 6.9e-68 255.0
Lcy12g1998 . 1 1264 FH2 protein (formin) Gene Family AT1G31810 66.9 0.0e+00 1216.1
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT1G31810 53.2 2.2e-43 175.6
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT1G31810 60.3 4.7e-38 157.9
Lcy2g0552 . 1358 1679 FH2 protein (formin) Gene Family AT5G07650 74.2 6.3e-129 459.1
Lcy5g2518 . 985 1292 FH2 protein (formin) Gene Family AT5G07650 70.5 2.9e-118 423.7
Lcy2g0173 . 976 1294 FH2 protein (formin) Gene Family AT5G07650 62.2 6.2e-108 389.4
Lcy12g1998 . 930 1261 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lcy9g1889 . 1092 1397 FH2 protein (formin) Gene Family AT5G07650 61.9 1.5e-101 368.2
Lcy8g2223 . 43 217 FH2 protein (formin) Gene Family AT5G07650 60.0 8.5e-49 193.0
Lcy9g0003 . 47 186 FH2 protein (formin) Gene Family AT5G07650 63.6 1.2e-42 172.6
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07650 65.1 7.4e-37 153.3
Lcy2g0552 . 1285 1669 FH2 protein (formin) Gene Family AT5G07770 69.9 1.1e-141 501.1
Lcy5g2518 . 898 1292 FH2 protein (formin) Gene Family AT5G07770 62.6 1.2e-127 454.5
Lcy2g0173 . 899 1287 FH2 protein (formin) Gene Family AT5G07770 57.3 6.0e-116 415.6
Lcy12g1998 . 866 1255 FH2 protein (formin) Gene Family AT5G07770 55.8 5.1e-115 412.5
Lcy9g1889 . 1016 1389 FH2 protein (formin) Gene Family AT5G07770 56.1 1.4e-109 394.4
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT5G07770 55.6 4.1e-40 163.7
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07770 65.9 6.5e-38 156.4
Lcy9g1889 . 1008 1397 FH2 protein (formin) Gene Family AT3G32400 74.0 1.5e-160 563.5
Lcy2g0173 . 883 1296 FH2 protein (formin) Gene Family AT3G32400 66.3 5.0e-148 521.9
Lcy12g1998 . 866 1260 FH2 protein (formin) Gene Family AT3G32400 66.0 3.5e-141 499.2
Lcy2g0552 . 1285 1679 FH2 protein (formin) Gene Family AT3G32400 65.2 1.0e-140 497.7
Lcy5g2518 . 878 1298 FH2 protein (formin) Gene Family AT3G32400 58.8 2.7e-133 473.0
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT3G32400 53.2 9.7e-43 172.2
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT3G32400 61.9 2.9e-39 160.6
Lcy8g2223 . 47 215 FH2 protein (formin) Gene Family AT2G25050 53.8 3.0e-42 171.8
Lcy9g0003 . 47 167 FH2 protein (formin) Gene Family AT2G25050 62.8 6.9e-39 160.6
Lcy2g0552 . 1286 1679 FH2 protein (formin) Gene Family AT5G07780 63.3 1.6e-124 443.7
Lcy5g2518 . 909 1298 FH2 protein (formin) Gene Family AT5G07780 57.1 3.5e-111 399.4
Lcy12g1998 . 867 1256 FH2 protein (formin) Gene Family AT5G07780 52.7 5.1e-102 369.0
Lcy2g0173 . 906 1287 FH2 protein (formin) Gene Family AT5G07780 53.8 1.2e-100 364.4
Lcy9g1889 . 1017 1390 FH2 protein (formin) Gene Family AT5G07780 52.3 5.4e-96 349.0
Lcy2g0552 . 1 1688 FH2 protein (formin) Gene Family AT5G07740 60.7 0.0e+00 1102.8
Lcy8g2223 . 47 216 FH2 protein (formin) Gene Family AT5G07740 65.9 1.3e-51 203.4
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07740 72.2 2.6e-44 179.1
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07740 69.0 4.3e-39 161.8
Lcy2g0552 . 1357 1686 FH2 protein (formin) Gene Family AT5G07760 73.8 2.9e-127 453.8
Lcy5g2518 . 984 1298 FH2 protein (formin) Gene Family AT5G07760 69.6 3.0e-116 417.2
Lcy2g0173 . 975 1294 FH2 protein (formin) Gene Family AT5G07760 64.2 4.7e-109 393.3
Lcy12g1998 . 940 1261 FH2 protein (formin) Gene Family AT5G07760 61.3 2.8e-106 384.0
Lcy9g1889 . 1091 1405 FH2 protein (formin) Gene Family AT5G07760 61.4 2.7e-101 367.5
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT5G07760 62.6 1.6e-48 192.2
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07760 73.0 2.8e-45 181.4
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07760 69.0 6.0e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015227 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 8 0 0 0 0 0 11