Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0047 ATGATCCTCCCTTCTGCAGTCCACGGCGGGCGGGAGTCATGTACTTGTGATTCCGATGCCGCCGCCGCCGCCGAGCACGGCGCAAAGGAAGCGATTAAGTACAAGGTGGGTTCGATCGCTTCGGTGCTGGTGGCGGGAGCTGCGGGCGTGAGCCTTCCTTTGCTGGGCAAGAAGATTCCGTCGCTGCGGCCTGAAAACGACATATTCTTCATGATAAAGGCGTTTGCTGCGGGCGTCATTTTAGGGACTGGGTTCATCCATATTCTGCCGGATGCGTTCGAAGACTTGACGTCGCCCTGCATCGGACGCAGTCCTTGGGGCGATTTCCCATTCGCGGGGTTCATTGCAATGGGCTCCTCCATCGGCACCTTGATGGAACGAGGCGAGGAGCATGCCGGTCACGTGCATGTCCACACGCACGCCACCCACGGCCACGCTCATGGCTCTGCTGCACCCACCGACGAATTGAGTCTGATTGAGTTGGTTCGGTACCGGATTATATCTCAGGTGTTGGAATTGGGAATTGTGGTTCATTCAGTGATAATCGGGATTTCTCTTGGAGCCTCCCAGAGCCCTGCCACCATTAAGCCTCTGCTGGTAGCTCTGTCTTTCCACCAGTTTTTCGAGGGCATGGGACTCGGTGGCTGCATTTCCCAGGAAATGAAAGGGAATATAACTCCAAATAAAAGAAGGGAAGTGGATGATTGTCCACTTGGGTGCAAGGCACAATTTAGGTGGCGGTCAGCGGCAACAATGGCGACATTTTTCTCACTGACGGCGCCTGTGGGAATTGCAGTGGGAATCGGAATCTCAGGAGTTTACAGAGACAACAACCGGACGGCTCTGATCGTAGAAGGAAGCATGAACTCGGCATCGGCAGGGATATTGATATACATGGCGCTGGTGGACCTTCTTGCGGCTGATTTCATGAACCCAAGAATGCAAAACAATTTGGGACTTCAATTAGGAGCTAATATCTCTTTGCTTTTGGGGGCTGCTTGCATGTCTGTGTTGGCCAAATGGGCTTAA 1029 53.55 MILPSAVHGGRESCTCDSDAAAAAEHGAKEAIKYKVGSIASVLVAGAAGVSLPLLGKKIPSLRPENDIFFMIKAFAAGVILGTGFIHILPDAFEDLTSPCIGRSPWGDFPFAGFIAMGSSIGTLMERGEEHAGHVHVHTHATHGHAHGSAAPTDELSLIELVRYRIISQVLELGIVVHSVIIGISLGASQSPATIKPLLVALSFHQFFEGMGLGGCISQEMKGNITPNKRREVDDCPLGCKAQFRWRSAATMATFFSLTAPVGIAVGIGISGVYRDNNRTALIVEGSMNSASAGILIYMALVDLLAADFMNPRMQNNLGLQLGANISLLLGAACMSVLAKWA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 773164 775554 + Maker00004127 Lcy4g0047 629573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0047 342 PANTHER ZINC/IRON TRANSPORTER 31 341 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Lcy4g0047 342 Pfam ZIP Zinc transporter 131 221 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy4g0047 342 Pfam ZIP Zinc transporter 33 125 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy4g0047 342 Pfam ZIP Zinc transporter 241 339 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy4g0047 342 NCBIfam ZIP zinc/iron transport family 18 220 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0047 Lcy-Chr4:773164 Lcy9g1445 Lcy-Chr9:39486126 1.01E-104 dispersed
Lcy4g0047 Lcy-Chr4:773164 Lcy4g0050 Lcy-Chr4:814116 2.25E-205 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0047 K14709 - csv:101216720 432.565