Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0065 ATGGCGTCTTCCTCTTTAGGTTTCGTCTTTGCTCTTTGGGCGATTGCTTCCATCGTCAGCCACCTGGTTGTTTTCTCTGAAGCTCAGAATTCAACTCAACCCATCACTGATCCTGATGAAGCAAGAGCTCTGAATTCCATATTTAGACAATGGCGTATATCGGCGCCATCGGGGGCGTGGAATATAAGTGGGAATCTATGCAGTGGGAGAGCAGTCGATACTACCACCAGAGTCGACGTTGGTGGAAACCTCAATCCTCTTATAAAATGCGATTGCTCAGACGGCGTTACTTGCCACATTACTCAAATGCACGTTTATGCAATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACTTTAACATCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGTCAGGAACGCTATCTGCATCTGTTGGTAATCTCACACAATTACAAACCTTGAGCCTTGGAATTAATGCTTTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTACTAATCTGAAACTGTTGGCATTTGGGTCCAACAATTTCTCTGGTTCCTTACCACCAGAGCTTGGAAATCTTTCTATGTTGGAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGATATTCCTCCATCATTTTCAAATCTAAGAAACATGCGTATAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAATTGGACAAGGCTCACATCTTTGAGGTTTGAAGGAAACTCTTTTACAGGTCCCGTACCATCAACGTTTTCAAGCTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGAAGCTCTTCTCTGGCGTTCATAAGTAATATGAAATCTCTAACTCTACTGGTGTTGAGAAATAATAATATGACAGGTTCAATTCCATCCAACATTGGAGAATTTCGCAACCTTACCCAGCTGTTTCTTGGAAATAACAAGTTAACTGGGACCATACCTACACAGAAGAGTGCATCGCTTCTTAATATCGACTTGTCGTATAATGATTTATCAGGGAGCTTTCCTTCTTGGACTAACCAGCAAAACTTACAGCTAAATTTTGTTGCCAACAACTTCACAATTGATGGGTCAAGTAGCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGATCCTCCAATATATTCTAGTTTCGGAATTAAGTGTGGAGGTCCACAGATAACAAGTTCATCAAGGATTTTGTTTGAAAGGGAAGATGAGATTCTTGGTCCGGCTACGTACTTTGTTACTGAGTCAAATAGGTGGGCTGTTAGTAATACTGGATACTTTACTGGGTCCAACAATGCTCAATTCACAGCCAACACGTTGTCTCAATTCTCAAACACCATTGATACAGAGCTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACCGTGAACCTTCAGTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGTCGTGGGAGGCGTGTCTTTGATATATATATCCAGGGAAATCGTGTCATACAGAATTTTGATATTAGAAGGGCAGCAGGTGGGTCTTTCCTTGCTGTTAGTAGGAGTTTTACGGCTGTAGTTACAGAAAACTTCCTGGAAGTTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTACTCAGGGTACTTATGGACCCTCTATTTCGGCCATCAGTGCTACCCCAGATTTTGAACCAACTGTCAGTAACGAGCCTCCAAGTACGAAGGAGAATAATAGAACAGGCCTAATTGTCGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGTGCAGTTTTCATTGTCGTCCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGACGAAGAGCTCCTAGGAATAGATGCTAGACCGTACACATTTAGTTTTTCTGAACTAAGGGGTGCTACAGAGGACTTTAATTCATCCAACAAACTTGGCGAAGGAGGATTTGGACCTGTTTACAAGGGAACACTATGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCTCACCAAGGAAAGAGTCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAACTATATGGATGTTGCATCGAGGCCGATAAACGACTCCTGGTTTATGAGTTTCTTGAAAATAAGAGTCTAGACCAAGCATTATTTGCAAGAGGTCTCACTTACCTTCATGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTAAAGGCCAGTAACATCTTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACTCGTGTCGCCGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACAGAGAAGGCTGATGTCTTTGGATTTGGTGTTGTGGCTCTTGAAATTGTCAGTGGAAGACCAAATTCAGATCCAAGCTTAGAGCAAGACAAAGTTTATCTTCTTGAATGGGCATGGCACCTCCATGAAAACAACTGTGAACTTGAGATGGTGGATTCTGGATTATCAGAGTTCGACAAGGAGGAAGTGAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCATCGATGTCCCGTGTCGTGGCAATGCTGACGGGAGACATCGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAGATAATCCATCAACCGAAGAACCTGATACTGGCCGTTATGCATCGACAAGTTCGAGTATCGTTGATACAAATCGCTCGCCAATGAATGCTTCTAATCCAATGCTCCGTGGATTGTTAGGGGAGGCAGTTCTGAATTCTGATTTTGACAACGGCCAGCAACGAGCGGCAGTGGATGAACGCAGGGCCACCAACCTTGAATTGTCTACGCAGCCATTTTCAGGTTTCATTTTTGCTCTTTGTGCTGTTGCTTCCATCATCAGCCACCTGATTGTTTTGTCTGTAGCTCAGAATTCAGCTGAACCCACCACTGATCCTGATGAAGCAAGAGCTTTGAATTCCATATTTAGACAATGGCGTATAGCGGCGCCATCAGGGGTGTGGAATATAAGTGGGAATCTATGCAGTGCGAGGGCAGTCGACAACACCCCCGTCGACAGTAATGGACTCCTCAATCCTCTTATAAAATGCGATTGCTCAGCCAACAACGGCGCTACTTGCCACATTACTCAACTGTATTTCTCTCTCTCTCTCTCTGTCTCTCTTCGTGCATCTATCACATTGCATTTGATGATTGTTTTCTTTTTGCTTGCCTTAAGCATTCATGTTCCGCACGTTTATGCAATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACATTAACTTTCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGTCAGGAACGCTATCTGCATCTGTTGTTAATCTCACCCAATTACGAACCTTGAGCCTTGGCATTAATGCTTTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTACTAATCTGAGACTGTTGGCATTCGGGTCCAACAATTTCTCTGGTTCCTTACCACCAGAGCTTGGAAATCTTTCTATGTTGGAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGATATTCCTCCATCATTTTCAAATCTAAGAAACATGCGTATAGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAATTGGACAAGGCTCACATCTTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCGTTCATCAGTAATATGAAATCTCTAACTCTCCTGGTGTTGAGAAATAATAATATTTCAGGTTCAATTCCATCCAACATTGGAGAATTACGAAGCCTTACCCAACTATTTCTTGGAAATAACAAGTTAACTAGGACCATACCTACACAGAAGAGTGCATCACTTCTTAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTTCTTGGATCAACGACCGAAACTTACAGCTAAATTTAGTTGCCAACAACTTCACAATTGATGGTTCAAGTAGCAGTGGTTTGCCTTCTGGATTGATTTGTCTTCAACGCAACTTTCCTTGTAATCGAGATCGTCCAAGATATTTTAATTTCGGGATCAAGTGTGGAGGTCCAGAGATAACAAGTTCATCAGGGATTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCGGCTACGTACTTTGTTACTGAGTCTAATAGGTGGGCTGTTAGTAATACTGGATTCTTTACCGGGTCCAACAATCCTCGATACACAGGGAACACCTCGTCTCCATTCCCAACCATTGACGCAGAGCTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACCGTGAACCTTCAGTTTGCAGAAATAGCTATCGAAGATTCAAATAGATGGCAAAGCCGTGGGAGGCGTGTCTTTGATATATATATCCAGGGAAATCGTGTCCTACAGAATTTTGATATTAGAAGGGCAGCAGGTGGATCTTTCCTTCCTGTTAATAGGAGTTTTACGGCTGTAGTTATAGAAAACTTCATGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTGATCAGGGTACTTATGGACCCTCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGAACCAACTGTCAGTAATATGCCTCCAAGTACTGAGGAGAATAATAGAATGGGCCTAATTGTCGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTACTGGTGCAGTTTTCATTGTCATCCAGAGAAGAAAAAGGTGTCGTGCCTATGAAGATGAAGAGCTCCTGGGAATAGATGCTAGACCGTACACATTTAGTTTTTCTGAACTAAGGGGTGCAACAGAGGACTTCAATTCATCCAACAAACTTGGCGAGGGAGGATTCGGTCCTGTTTACAAGGGAACACTAAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAACTATATGGATGTTGCATCGAGGCCAATAAGCGTCTCCTTGTTTATGAATTTCTTGAAAATAAGAGTCTTGACCAAGCATTGTTTGAAAAAGGACATTTGATTCTTGATTGGCCAACACGTTTCGATATATGCGTGGGAGTGGCAAGAGGTCTCACTTACCTTCACGAGGAATCAAGACTTCGCATAGTACACAGAGACGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTGGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGAACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCATCTTACGGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCGAATTCAGATCCAAGCTTAGAGCAAGACAAAGTTTATCTTCTCGAATGGGCATGGAACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTACAACAAGGAGGAAGTAAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCATCGATGTCCCGTGTCGTGGCAATGCTGACTGGAGACATCGAAGTGGCTGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAATTTTGATGACATAACAAGCTTTATAGATGATCCATCCACTGAAGAACCTGATACTAGCCGTTATGCATCGACAAGTTCGATTGTTGTTGATACAGATAGCTCGCCAATCAGTGATTCTAAACCAATCCTCCGTGGATTATTAGGGGACGCTGGTCCTAAAGCTTTGCCCTCAAAGAGTCAGAGCCACTATGAATTCTTCTTTTTGGGTCATCTTCGGCCATCGATGTCCCGCATGGGCGCAATGCTGACGGGAGACATCGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAGATGATCAACCAAAGGACCTGATACTGGCTGTTATGCATCGACAAGTTCGAGTATCGTTGATACAAATCGCTCGCCAATGA 6351 43.06 MASSSLGFVFALWAIASIVSHLVVFSEAQNSTQPITDPDEARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTRVDVGGNLNPLIKCDCSDGVTCHITQMHVYAINVVGVLPPELWTLTSLTYLKLDQNFLSGTLSASVGNLTQLQTLSLGINALSGELPKELGSLTNLKLLAFGSNNFSGSLPPELGNLSMLEELYIDSSGVSGDIPPSFSNLRNMRIVWASDNEFTGRIPDFIGNWTRLTSLRFEGNSFTGPVPSTFSSLTSLTELRIGDLSNGSSSLAFISNMKSLTLLVLRNNNMTGSIPSNIGEFRNLTQLFLGNNKLTGTIPTQKSASLLNIDLSYNDLSGSFPSWTNQQNLQLNFVANNFTIDGSSSSGLPSGLNCLQRNFPCNRDPPIYSSFGIKCGGPQITSSSRILFEREDEILGPATYFVTESNRWAVSNTGYFTGSNNAQFTANTLSQFSNTIDTELFQTQRLSASSLRYYGLGLENGNYTVNLQFAEIAFPDSNTWQSRGRRVFDIYIQGNRVIQNFDIRRAAGGSFLAVSRSFTAVVTENFLEVHLFWAGKGTCCIPTQGTYGPSISAISATPDFEPTVSNEPPSTKENNRTGLIVGLVVGLGSVFFLIIGAVFIVVQRRKRRRAYEDEELLGIDARPYTFSFSELRGATEDFNSSNKLGEGGFGPVYKGTLCDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFARGLTYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWHLHENNCELEMVDSGLSEFDKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDNPSTEEPDTGRYASTSSSIVDTNRSPMNASNPMLRGLLGEAVLNSDFDNGQQRAAVDERRATNLELSTQPFSGFIFALCAVASIISHLIVLSVAQNSAEPTTDPDEARALNSIFRQWRIAAPSGVWNISGNLCSARAVDNTPVDSNGLLNPLIKCDCSANNGATCHITQLYFSLSLSVSLRASITLHLMIVFFLLALSIHVPHVYAINVVGVLPPELWTLTFLTYLKLDQNFLSGTLSASVVNLTQLRTLSLGINALSGELPKELGSLTNLRLLAFGSNNFSGSLPPELGNLSMLEELYIDSSGVSGDIPPSFSNLRNMRIVWASDNEFTGRIPDFIGNWTRLTSLRIGDLSNGSSSLAFISNMKSLTLLVLRNNNISGSIPSNIGELRSLTQLFLGNNKLTRTIPTQKSASLLNIDLSYNDLSGSFPSWINDRNLQLNLVANNFTIDGSSSSGLPSGLICLQRNFPCNRDRPRYFNFGIKCGGPEITSSSGILFERENETLGPATYFVTESNRWAVSNTGFFTGSNNPRYTGNTSSPFPTIDAELFQTQRLSASSLRYYGLGLENGNYTVNLQFAEIAIEDSNRWQSRGRRVFDIYIQGNRVLQNFDIRRAAGGSFLPVNRSFTAVVIENFMEIHLFWAGKGTCCIPDQGTYGPSVSAISATPDFEPTVSNMPPSTEENNRMGLIVGLVVGLGSVFFLITGAVFIVIQRRKRCRAYEDEELLGIDARPYTFSFSELRGATEDFNSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEANKRLLVYEFLENKSLDQALFEKGHLILDWPTRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWNLHENNCELEMVDSELSEYNKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWNFDDITSFIDDPSTEEPDTSRYASTSSIVVDTDSSPISDSKPILRGLLGDAGPKALPSKSQSHYEFFFLGHLRPSMSRMGAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDDQPKDLILAVMHRQVRVSLIQIARQ 2116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 973195 999775 + Maker00004002 Lcy4g0065 629591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0065 2116 Pfam Leucine Rich Repeat 1314 1336 IPR001611 GO:0005515(InterPro)
Lcy4g0065 2116 FunFam Leucine-rich repeat receptor-like protein kinase 400 590 - -
Lcy4g0065 2116 ProSiteProfiles Protein kinase domain profile. 670 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 Gene3D Ribonuclease Inhibitor 1303 1405 IPR032675 -
Lcy4g0065 2116 FunFam Leucine-rich repeat receptor-like protein kinase 1423 1612 - -
Lcy4g0065 2116 FunFam Leucine-rich repeat receptor-like protein kinase 639 745 - -
Lcy4g0065 2116 CDD STKc_IRAK 676 921 - -
Lcy4g0065 2116 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 945 IPR051824 GO:0005886(PANTHER)
Lcy4g0065 2116 Gene3D - 1424 1612 - -
Lcy4g0065 2116 Gene3D - 402 590 - -
Lcy4g0065 2116 Gene3D Phosphorylase Kinase; domain 1 631 745 - -
Lcy4g0065 2116 Gene3D Phosphorylase Kinase; domain 1 1654 1767 - -
Lcy4g0065 2116 SMART LRR_typ_2 169 193 IPR003591 -
Lcy4g0065 2116 SMART LRR_typ_2 1312 1334 IPR003591 -
Lcy4g0065 2116 SMART LRR_typ_2 289 313 IPR003591 -
Lcy4g0065 2116 SMART LRR_typ_2 1192 1215 IPR003591 -
Lcy4g0065 2116 SMART LRR_typ_2 1336 1360 IPR003591 -
Lcy4g0065 2116 SMART LRR_typ_2 1216 1240 IPR003591 -
Lcy4g0065 2116 SMART LRR_typ_2 121 145 IPR003591 -
Lcy4g0065 2116 SUPERFAMILY L domain-like 90 369 - -
Lcy4g0065 2116 Gene3D Ribonuclease Inhibitor 1007 1302 IPR032675 -
Lcy4g0065 2116 Pfam Protein tyrosine and serine/threonine kinase 1695 1959 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 Gene3D Ribonuclease Inhibitor 37 278 IPR032675 -
Lcy4g0065 2116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1812 1824 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 MobiDBLite consensus disorder prediction 950 973 - -
Lcy4g0065 2116 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1768 1972 - -
Lcy4g0065 2116 Pfam Malectin domain 1426 1608 IPR021720 -
Lcy4g0065 2116 Pfam Malectin domain 403 586 IPR021720 -
Lcy4g0065 2116 Gene3D Transferase(Phosphotransferase) domain 1 1768 1971 - -
Lcy4g0065 2116 Gene3D Transferase(Phosphotransferase) domain 1 747 930 - -
Lcy4g0065 2116 CDD STKc_IRAK 1698 1962 - -
Lcy4g0065 2116 Pfam Protein kinase domain 671 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 ProSiteProfiles Protein kinase domain profile. 1692 1966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 FunFam Leucine-rich repeat receptor-like protein kinase 1661 1767 - -
Lcy4g0065 2116 FunFam Os05g0263100 protein 41 278 - -
Lcy4g0065 2116 SMART serkin_6 670 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 SMART serkin_6 1692 1960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1143 1405 - -
Lcy4g0065 2116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0065 2116 Gene3D Ribonuclease Inhibitor 279 379 IPR032675 -
Lcy4g0065 2116 SUPERFAMILY L domain-like 1154 1393 - -
Lcy4g0065 2116 SUPERFAMILY Protein kinase-like (PK-like) 1676 1995 IPR011009 -
Lcy4g0065 2116 SUPERFAMILY Protein kinase-like (PK-like) 654 952 IPR011009 -
Lcy4g0065 2116 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 931 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0337 Lcy-Chr2:2780046 Lcy4g0065 Lcy-Chr4:973195 3.89E-97 dispersed
Lcy4g0065 Lcy-Chr4:973195 Lcy9g1396 Lcy-Chr9:38975458 6.31E-163 dispersed
Lcy5g1299 Lcy-Chr5:30700054 Lcy4g0065 Lcy-Chr4:973195 7.96E-12 dispersed
Lcy4g0065 Lcy-Chr4:973195 Lcy4g0067 Lcy-Chr4:1020220 3.02E-307 proximal
Lcy4g0065 Lcy-Chr4:973195 Lcy4g0066 Lcy-Chr4:1005747 4.55E-178 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65831 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0065 - - - 0.0