Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0067 ATGATCAAGACTTCCGCCTTTCGACAAAGAATGCAGCAGAAAGGGCCAACCAAAGAAGACATCACTCTCGATAGCCTATCAAAGGGAAATCGTGTCATACAGAATTTTGATATTAGTAGGGCAGCGGGTGGGTCTTTCCTTGCTGTTAATAGGAGTTTTACGGCTGTAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCGTACCTGTTCAGGGTACTTATGGACCCTCTGTTTCAGCCATCAGTGCGACCCCAGATTTTGAACCAACTATCAATAACATGCCTCCAAGTACTGAGGAGAATAACAGAACGGGCCTAATTGTTGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGTGCAGTTTTCATTGTCGTCCAGAGAAGGAAAAGGTGTCGTGCCTGTGAAGATGAAGAGCTCCTAGGAATAGATTCTAGACCATACACATTTAGTTTTTCTGAACTAAGGGGTGCAACAGAGGACTTTAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGTCCTGTTTACAAGGGAACACTAAGTGATGGAAGAGTGGTTGCCGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTCAAACTATATGGATGTTGCATTGAGGCCGATAAGCGTCTCCTTGTTTATGAATTTCTTGAAAATAAGAGTCTTGACCAAGCATTGTTTGAAAAAAGACATTTGATTCTTGATTGGCCAACACGTTTCGACATATGCGTGGGAGTGGCAAGAGGTCTCACTTACCTTCACGAGGAATCAAGATTTCGCATAGTACACAGAGACGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTGGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCGAATTCAGATACAAGCTTAGAGCAAGACAAAGTTTATCTTCTCGAATGGGCATGGAACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTACAGCAAGGAGGAAGTAAAAAGGGTGACTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCATCTCTTCGGCCATCAATGTTCCGTGTCGTGGCAATGCTGACTGGAGTCATCGAAGTGGCTGCTGTAACTTCCAAACCAGTATACATGACAGATTGGAATTTTGATGACATAACAAGCTTTATAGATAATCCATCCACTGAAGAACCTGATATTGGCCATTATGCATCGACAAGTTCGATTGTTGTTGATACAGATCGCTCACCAATCAGTGATTCTAAACCAATCCTCCGTGGATTATTAGGGGACGGTCAGTGA 1539 43.66 MIKTSAFRQRMQQKGPTKEDITLDSLSKGNRVIQNFDISRAAGGSFLAVNRSFTAVVTENFLEIHLFWAGKGTCCVPVQGTYGPSVSAISATPDFEPTINNMPPSTEENNRTGLIVGLVVGLGSVFFLIIGAVFIVVQRRKRCRACEDEELLGIDSRPYTFSFSELRGATEDFNSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKRHLILDWPTRFDICVGVARGLTYLHEESRFRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEQDKVYLLEWAWNLHENNCELEMVDSELSEYSKEEVKRVTGVALLCTQTSPSLRPSMFRVVAMLTGVIEVAAVTSKPVYMTDWNFDDITSFIDNPSTEEPDIGHYASTSSIVVDTDRSPISDSKPILRGLLGDGQ 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1020220 1024575 + Maker00003941 Lcy4g0067 629593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0067 512 FunFam Putative LRR receptor-like serine/threonine-protein kinase 249 453 - -
Lcy4g0067 512 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 467 IPR051824 GO:0005886(PANTHER)
Lcy4g0067 512 Gene3D - 14 93 - -
Lcy4g0067 512 Pfam Malectin domain 29 89 IPR021720 -
Lcy4g0067 512 Gene3D Phosphorylase Kinase; domain 1 134 248 - -
Lcy4g0067 512 SUPERFAMILY Protein kinase-like (PK-like) 156 475 IPR011009 -
Lcy4g0067 512 ProSiteProfiles Protein kinase domain profile. 173 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0067 512 FunFam Leucine-rich repeat receptor-like protein kinase 143 248 - -
Lcy4g0067 512 CDD STKc_IRAK 179 443 - -
Lcy4g0067 512 MobiDBLite consensus disorder prediction 1 20 - -
Lcy4g0067 512 Gene3D Transferase(Phosphotransferase) domain 1 249 456 - -
Lcy4g0067 512 SMART serkin_6 173 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0067 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0067 512 Pfam Protein tyrosine and serine/threonine kinase 176 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0067 Lcy-Chr4:1020220 Lcy9g1380 Lcy-Chr9:38709991 2.10E-138 dispersed
Lcy4g0065 Lcy-Chr4:973195 Lcy4g0067 Lcy-Chr4:1020220 3.02E-307 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65832 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0067 - - - 0.0