Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0098 ATGTCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGCGTCATGAACAACGGTGGCCAGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGATGACGACGTTACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACCCTGGAGGGATGAGTGGCTCGGTCTCGGTGATGAACCGAGTCCAGGATATTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAACCCTTTAACTGGAAACGGTGGTGCCGACCAGCTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGATAAGGTGCAAGCTGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCTGTCAACCAACAGGGTACCGATGGCTTTCCTGTTAGGTCAGTTCAACCACAAAGAGCTGCTTCCTTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATGGCAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTAGATTCTGGACAAGATGATGGTTTGTTGGAAACTTCATGTACACATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGCCGTGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGCATTCAGGAGTCTTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCTAACGAATCCGATGCTGCAATCAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 921 47.77 MSDSNFQDAMYGSGVMNNGGQDLDNIQNRVGDEDDDVTGGEESIDNPQMRFEDPGGMSGSVSVMNRVQDIVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAMADEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQESSVKETEQSDGEANESDAAINVDILTSNGDK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1372254 1377233 + Maker00003963 Lcy4g0098 629624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0098 306 Pfam tify domain 90 120 IPR010399 -
Lcy4g0098 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Lcy4g0098 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Lcy4g0098 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Lcy4g0098 306 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy4g0098 306 MobiDBLite consensus disorder prediction 1 52 - -
Lcy4g0098 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 PANTHER GATA TRANSCRIPTION FACTOR 28 39 301 IPR045280 GO:0006355(InterPro)
Lcy4g0098 306 CDD ZnF_GATA 224 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 SMART tify_2 86 121 IPR010399 -
Lcy4g0098 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 MobiDBLite consensus disorder prediction 272 306 - -
Lcy4g0098 306 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Lcy4g0098 306 MobiDBLite consensus disorder prediction 1 25 - -
Lcy4g0098 306 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1489 Lcy-Chr13:33498077 Lcy4g0098 Lcy-Chr4:1372254 4.30E-77 dispersed
Lcy3g2308 Lcy-Chr3:49960572 Lcy4g0098 Lcy-Chr4:1372254 9.44E-61 dispersed
Lcy4g0098 Lcy-Chr4:1372254 Lcy6g0914 Lcy-Chr6:9274699 8.91E-06 dispersed
Lcy4g0098 Lcy-Chr4:1372254 Lcy2g0559 Lcy-Chr2:4789191 6.62E-06 transposed
Lcy4g0098 Lcy-Chr4:1372254 Lcy1g0710 Lcy-Chr1:6075074 2.82E-06 transposed
Lcy4g0098 Lcy-Chr4:1372254 Lcy5g2527 Lcy-Chr5:48076697 6.51E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19920 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0098 - - - 0.0