Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0098 ATGTCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGCGTCATGAACAACGGTGGCCAGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGATGACGACGTTACCGGCGGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTCGAAGACCCTGGAGGGATGAGTGGCTCGGTCTCGGTGATGAACCGAGTCCAGGATATTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAACCCTTTAACTGGAAACGGTGGTGCCGACCAGCTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGATAAGGTGCAAGCTGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCTGTCAACCAACAGGGTACCGATGGCTTTCCTGTTAGGTCAGTTCAACCACAAAGAGCTGCTTCCTTGAATAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATGGCAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAGACGTTAGATTCTGGACAAGATGATGGTTTGTTGGAAACTTCATGTACACATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGCCGTGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGTTGGCATTCAGGAGTCTTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCTAACGAATCCGATGCTGCAATCAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 921 47.77 MSDSNFQDAMYGSGVMNNGGQDLDNIQNRVGDEDDDVTGGEESIDNPQMRFEDPGGMSGSVSVMNRVQDIVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAMADEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNVGIQESSVKETEQSDGEANESDAAINVDILTSNGDK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1372254 1377233 + Maker00003963 Lcy4g0098 629624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0098 306 Pfam tify domain 90 120 IPR010399 -
Lcy4g0098 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Lcy4g0098 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Lcy4g0098 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Lcy4g0098 306 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy4g0098 306 MobiDBLite consensus disorder prediction 1 52 - -
Lcy4g0098 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 PANTHER GATA TRANSCRIPTION FACTOR 28 39 301 IPR045280 GO:0006355(InterPro)
Lcy4g0098 306 CDD ZnF_GATA 224 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 SMART tify_2 86 121 IPR010399 -
Lcy4g0098 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 MobiDBLite consensus disorder prediction 272 306 - -
Lcy4g0098 306 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Lcy4g0098 306 MobiDBLite consensus disorder prediction 1 25 - -
Lcy4g0098 306 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy4g0098 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0098 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1489 Lcy-Chr13:33498077 Lcy4g0098 Lcy-Chr4:1372254 4.30E-77 dispersed
Lcy3g2308 Lcy-Chr3:49960572 Lcy4g0098 Lcy-Chr4:1372254 9.44E-61 dispersed
Lcy4g0098 Lcy-Chr4:1372254 Lcy6g0914 Lcy-Chr6:9274699 8.91E-06 dispersed
Lcy4g0098 Lcy-Chr4:1372254 Lcy2g0559 Lcy-Chr2:4789191 6.62E-06 transposed
Lcy4g0098 Lcy-Chr4:1372254 Lcy1g0710 Lcy-Chr1:6075074 2.82E-06 transposed
Lcy4g0098 Lcy-Chr4:1372254 Lcy5g2527 Lcy-Chr5:48076697 6.51E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy13g1489 . 47 297 Tify Gene Family AT4G24470 53.9 3.9e-69 259.2
Lcy4g0098 . 89 267 Tify Gene Family AT4G24470 61.3 5.8e-49 192.2
Lcy3g2308 . 1 265 Tify Gene Family AT1G51600 60.8 5.0e-82 302.0
Lcy4g0098 . 86 287 Tify Gene Family AT1G51600 57.5 4.1e-52 202.6
Lcy3g2308 . 1 230 Tify Gene Family AT3G21175 57.4 2.9e-60 229.2
Lcy13g0311 . 1 186 Tify Gene Family AT4G14713 51.0 1.8e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19920 None None None None Lcy TF