Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0106 ATGTTCCCAATTGCCGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTACCTAATGGTGTCCTAAATGTGGTTCACGGCACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAGCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAAGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACACCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGTCGGGATCAACGTTCCAATTCCCGTTCCCTTACCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGAGTTAACTTCTTCACTCAGATAAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTGCAGCAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 855 44.21 MFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNISNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKALKVNSGTEPDADLGPVISKQAKERIHRLVQSGIDSGAKLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTAAVNLAMPTSLKS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1465533 1474898 - Maker00003907 Lcy4g0106 629632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0106 284 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 99 110 IPR016160 GO:0016491(InterPro)
Lcy4g0106 284 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 217 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Lcy4g0106 284 Pfam Aldehyde dehydrogenase family 3 217 IPR015590 GO:0016491(InterPro)
Lcy4g0106 284 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 74 217 IPR016163 GO:0016620(InterPro)
Lcy4g0106 284 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 74 217 - -
Lcy4g0106 284 SUPERFAMILY ALDH-like 3 265 IPR016161 GO:0016491(InterPro)
Lcy4g0106 284 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 73 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0843 Lcy-Chr1:7198187 Lcy4g0106 Lcy-Chr4:1465533 2.14E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0106 K00140 - csv:101204924 506.523