Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0106 ATGTTCCCAATTGCCGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTACCTAATGGTGTCCTAAATGTGGTTCACGGCACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAGCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAAGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACACCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGTCGGGATCAACGTTCCAATTCCCGTTCCCTTACCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGAGTTAACTTCTTCACTCAGATAAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTGCAGCAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 855 44.21 MFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNISNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKALKVNSGTEPDADLGPVISKQAKERIHRLVQSGIDSGAKLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTAAVNLAMPTSLKS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1465533 1474898 - Maker00003907 Lcy4g0106 629632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0106 284 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 99 110 IPR016160 GO:0016491(InterPro)
Lcy4g0106 284 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 217 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Lcy4g0106 284 Pfam Aldehyde dehydrogenase family 3 217 IPR015590 GO:0016491(InterPro)
Lcy4g0106 284 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 74 217 IPR016163 GO:0016620(InterPro)
Lcy4g0106 284 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 74 217 - -
Lcy4g0106 284 SUPERFAMILY ALDH-like 3 265 IPR016161 GO:0016491(InterPro)
Lcy4g0106 284 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 73 IPR016162 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0106 K00140 - - csv:101204924 506.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0843 Lcy-Chr1:7198187 Lcy4g0106 Lcy-Chr4:1465533 2.14E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40