Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0123 ATGTTGGAACCGGTTAGTTGCTGCCAGAGCTCCCAGTCCCAGATTTATAGTGTTGTCAAACAGAAGAATCCTTTCAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCCTCAACTTACACTTGAAGAAAGTGGCTGTTCCTTTATGCACTAGAAATTGCTGGAGGAATGATTATTCTTCAGTTCCTGTACTTTTCCACAACAGTGCCACCACAATAGTGTCCAAAGTAGTTGGACGGAATGGATACAATTGGTCTAATCATAGGCCTAAACAGAGGGAAAGATTAAGAATGCGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCTTAGCCGTGACTGTCGTAGTTGTTCCTCTATTTAGGAGAATTAAAGCTAGCCCTATACTCGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGTGTGATTAGAAATCTTATAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACAGCATTTGAACTTCCCCCTAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCCAGATCTGACTTGGTTAACATCAGAAGCATTGATGAAGCTATTGTGATTGGTGCCGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCAACAAGATTTGGCTCGGCAACTCTAGGGATACTACTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCGTACTTCCAGTTCTTGAGAGCCAGAATTTGGGCACAGAAAGTATCTGGCCAATGCTTGCGCAAGAAAGTTTGAAGGCTTTAGGTGGATTGGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTTGCAGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACAGTTGCTGGCACTTCACTAATCACTCAGAAGTTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCGATATTAGCAGAAACTAATTTCCGGACACAGATTGAAGCAGATATTAGGCCATTTAGGGGTTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATGCAGATTAATGAATACTGGAAGAGTGCACTCCTTTTGGCTTACACTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGCTGGGAGTGCTACCACTTGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGTAAGGCATCTGAATTCATCAGCGAAAAGTACAAGACAGAGGATAAAGCTGCAGATACGGTGAATTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTCTTGGCGAATTTCTTATCTACACCTTTGGTGTCTGGGGTAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATTGATCTTTCCGTAGTGAAGAGGTCGAGAAAACTTGGTTTTCCTGTTCTCTATGGAGATGGATCACGACCAGCAGTTTTGCAATCTGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCAACAATTGAGGCTGTTCAGAAGCTCCGGCTTGCTTTCCCTGCGGTAAATTCTCTCTTTAATATCCCAATTTATGCCCGAGCTAAGGACGTCGTGCATCTACTAGATTTAAAGAATGCAGGTGCGACAGACGCTATTCTGGAAGATGCTGAGACTAGTTTACAACTTGGGTCTAAGCTTTTGAAAGGGCTCGGCGTCATGTCTGACCAAGTGTCTTTCCTAAGTCAGATGGTTCGCAACTCTATGGAAATACAAGCTCAAGATGCACTTGACAAATCCAATGAGCAAGAGTTAGAGATTATGAAACCGCTGCAGATACGTGTCAAGGACTCAATCGAGTCCCCCGAGAACGAACTGTCGAGGCTGAACCAGGAAGATAATACTCAGATCTTAAATGGCAAAGAAATGGATCAAAGGAAGCAAGATACTGTTTTCCAGAAGCCTGAAGATTTAGATGGAAATGGAGTCCTATACTGTGACCTTGGTACAGAGAACAACTTTTTAGAGCAAAATGTGGTAGAGCCCCCAACCCCTTGCATAACAGCCACTGATGAGGTTTAG 2328 43.69 MLEPVSCCQSSQSQIYSVVKQKNPFRAYSHTVHQLCGPSLNLHLKKVAVPLCTRNCWRNDYSSVPVLFHNSATTIVSKVVGRNGYNWSNHRPKQRERLRMRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQFGVIRNLIDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSIDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVVLPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQINEYWKSALLLAYTPVPRMAKCSCTFGRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLVSGVDGNTPGWPYVAFDIDLSVVKRSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIEAVQKLRLAFPAVNSLFNIPIYARAKDVVHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENELSRLNQEDNTQILNGKEMDQRKQDTVFQKPEDLDGNGVLYCDLGTENNFLEQNVVEPPTPCITATDEV 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1627379 1639779 + Maker00004121 Lcy4g0123 629649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0123 775 MobiDBLite consensus disorder prediction 704 737 - -
Lcy4g0123 775 Pfam Sodium/hydrogen exchanger family 126 429 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy4g0123 775 Pfam TrkA-N domain 506 635 IPR003148 GO:0006813(InterPro)
Lcy4g0123 775 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 66 420 - GO:0009507(PANTHER)|GO:0016020(PANTHER)
Lcy4g0123 775 Gene3D - 115 482 IPR038770 -
Lcy4g0123 775 Coils Coil 668 688 - -
Lcy4g0123 775 ProSiteProfiles RCK N-terminal domain profile. 505 643 IPR003148 GO:0006813(InterPro)
Lcy4g0123 775 MobiDBLite consensus disorder prediction 721 736 - -
Lcy4g0123 775 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 505 649 IPR036291 -
Lcy4g0123 775 FunFam Glutathione-regulated potassium-efflux system protein KefB 503 681 - -
Lcy4g0123 775 Gene3D - 503 679 - -
Lcy4g0123 775 FunFam K(+) efflux antiporter 3, chloroplastic 115 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0907 Lcy-Chr2:8317292 Lcy4g0123 Lcy-Chr4:1627379 4.56E-15 dispersed
Lcy4g0123 Lcy-Chr4:1627379 Lcy6g0227 Lcy-Chr6:2049188 3.09E-20 dispersed
Lcy11g1953 Lcy-Chr11:43173678 Lcy4g0123 Lcy-Chr4:1627379 3.54E-76 transposed
Lcy13g2181 Lcy-Chr13:40751237 Lcy4g0123 Lcy-Chr4:1627379 1.20E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0123 K03455 - csv:101209266 1224.54