Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0132 ATGTCTCTTCCCTTTCTGGGGTTCGACAAATTCAAGCTTTTCGCCATTATTGAGCTTTTTGATGGGAAAGAAGAAGCTTTTTGGATGGAGACATCATCTATGGTGGTTTTTTCTGATATGGGAATGGAGGATAGTGGCTTTGTCGATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGCATACTCCCATTAGCAGCAGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAGACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCACAATGCCATATTTGGGTATGTGAAACAGCTCAAAACTGATGGGTGGAGTTCATACCAAGCAACTAATCATTTGCCAAACTCACAAATCGTTGCTTATCCGACTGCGTCTGTTTCGGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCGAAAGAGGAGGTTGTGTGTCCTCAGAGTATCAGCAACCTCCCTTCTGATATGTTGATTTCTCAGGGCTCATTACGCCACCAAAGCCACGTAACCAAGTCCTACCGTGGAACGAAAAGAACCGCTACTAACAGTAGATTCCCCCAGGCTCAAGATCACATTCTGGCAGAGCGGAAACGGCGTGAGAAGCTCAGCCAGCGGTTTATTGCTCTGTCTGCTATAGTTCCTGGCCTTAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATCAAATACCTGAAACAACTGCAAGAGAAAGTGAAGATATTAGAGGAACAAACCCGAAAGAAAGAAATCAAATCCGTGGTATTTGTCAAGAAATCCCAAGTTTCCGCTGATGGAAACAACACATGGAGAGAGGAGGACGAGCCACTTCCCGAGATCGAAGCAAGATTTTGCGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAGGAAAGATGTCCTAGAGAAGACAATTACTGAAATTGAAAAGTTGCACCTAACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTTGACATAACCATCATTGCTCAGATGGATAACGAATTCAGTTTGTCGCTAAAGGACCTCGTGAAGAAGTTGCAGTCGACATTCGCCTCGTTCCAATGA 1092 44.23 MSLPFLGFDKFKLFAIIELFDGKEEAFWMETSSMVVFSDMGMEDSGFVDQWHKSSMDELGILPLAAAFGENLQHSYAQTNLDQKASSNHSHNAIFGYVKQLKTDGWSSYQATNHLPNSQIVAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLISQGSLRHQSHVTKSYRGTKRTATNSRFPQAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRKKEIKSVVFVKKSQVSADGNNTWREEDEPLPEIEARFCDKNVLIRIHCEKRKDVLEKTITEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFSLSLKDLVKKLQSTFASFQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1717115 1720014 + Maker00004061 Lcy4g0132 629658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0132 363 Gene3D - 187 261 IPR036638 GO:0046983(InterPro)
Lcy4g0132 363 Coils Coil 228 255 - -
Lcy4g0132 363 CDD bHLH_AtNAI1_like 191 263 - -
Lcy4g0132 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 251 IPR036638 GO:0046983(InterPro)
Lcy4g0132 363 SMART finulus 195 244 IPR011598 GO:0046983(InterPro)
Lcy4g0132 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983(InterPro)
Lcy4g0132 363 PANTHER BHLH TRANSCRIPTION FACTOR 39 359 IPR052610 -
Lcy4g0132 363 Pfam Helix-loop-helix DNA-binding domain 193 239 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0867 Lcy-Chr1:7451225 Lcy4g0132 Lcy-Chr4:1717115 3.21E-53 dispersed
Lcy1g0868 Lcy-Chr1:7459308 Lcy4g0132 Lcy-Chr4:1717115 1.31E-49 dispersed
Lcy4g0132 Lcy-Chr4:1717115 Lcy6g1087 Lcy-Chr6:12171701 5.46E-45 dispersed
Lcy1g0866 Lcy-Chr1:7435370 Lcy4g0132 Lcy-Chr4:1717115 1.22E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19921 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0132 - - - 0.0