Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0134 ATGACTAATTCACCTAACCCTCCACCACTTCCCGCCCCCCGCCGCCGCCCTCCTCCGGTGGCTCTCCGCCACTTCCTCCTCCTCCTCCTCCTCCTCCTCTGTTCTCTTCCCATCTCCCATGGCGATGAACTTCAGCCACTTCTGGACCTCAAGGCTGCCCTCCACCAGAACTCAACCTCCTCCTCCTCTCTGGTTTTCAGCTCTTGGATTAGTGGGAAAGATGTTTGCAGCAACTTCCATGGCATTGTCTGTGATTCTAATGGGTCTGTTCTGGAAATCAATCTCTATGCTCAGAACTTATCTGGGGTTCTTCCTTTTGATTCCATTTGCTCTTTGAAATCTCTTGAGAAGCTGTCTTTTGGGTTGAATTCCTTGTATGGGAAGGTCAGTGATGGCTTGAGGAACTGTTCCAGGTTGAAGTATTTGGATTTGAGTCAGAATTCCTTCTCTGGTGAAGTGCCTGACTTGTCTTCTTTAGGAGGATTGAGGTTCTTGAGTTTGAATCAAAGTGGGTTTTCTGGGGATTTTCCTTGGAAATCTCTGCTGAATCTTACTGATTTGGAGTTCTTGAGCCTTGGAGACAATTCATTTAACCCAACAAGTTCATTCCCTTCAGAGATTCTTGAGCTTAAGAAGCTTCATTGGCTTTACCTCTCTAATTGCAGCATTCATGGAGAAATCCCACCTGGGATTGGGAATCTCTCTCTGCTTGAGAATCTTGAGCTCTCACAGAATGAACTTACAGGCGACATTCCTTCTGAGATTGTGAACCTGCAGAAGCTATGGCAGCTGGAGTTGCATGAGAATTCCTTGACCGGGAAGCTTCCGGTCGGGTTCCGTAACCTCACTGGATTGAGGAAGTTTGATGCCTCATCTAATAATCTTGAAGGTGATCTGATGGAGTTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTGAAAACCGATTTTCCGGTACGATACCGGAGGAGTTTGGGGACTTCAAAGAGCTTGTTGGTCTCTCTCTTTACCAGAACAAACTCACTGGCAGCCTCCCTCAAAAGATTGGATCTTGGGCAGCCTTCGAGTTCATTGATGTTTCAGAGAACTTCCTAACTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAGTATGACTCGTCTCTTGATGCTGCAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACACCAACTGTAAATCTTTGAATCGGTTTCGTGTAAACAATAACTCTCTTTCGGGCGTTGTTCCATCTGGGATTTGGAGTCTGCCAAATCTTAACATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGACTTCAGATATTGGTAAAGCAAAAGCTCTTGCCCAGTTACTCTTATCAAATAACCAGTTTTCTGGAAACTTACCGGCTGAGCTTGGCGAAGTATCGTCTTTAGTCTCAATCCATCTTGAATCGAACCAATTTGTTGGTCCAATACCAGAATCACTTGGCAAGTTGAAGGACTTGAGCAGCATTTCTTTGAATGACAACAAGTTTTCTGACAACATACCAAGCTCATTAGGCTCTTGCATTTCTCTTTCTACCATAAATCTAGCAATGAATTCATTCTCCGGGCATATTCCGGAGAATCTTGGATACTTGCCAATTCTAAACTCCTTGAATCTGTCGAACAATGAACTCTCAGGTGAAATTCCAATAAGTTTTTCGCACTTGAAGCTAAGCAGTTTCGACCTGTCTAATAATAGGTTAATTGGCCAAGTACCTGAATCACTGGCAATCCAAGCCTTTGATGAAAGTTTCATGGGGAATCCAGGCTTGTGCAGTGAGTCTCTCAGATACTTGAGTTCATGTTCATCAACCTCTAGATCATCCAGCCATCTCAAAACGTTGCTATCATGTACCATTGCTGGAATTCTAGTGTTGCTCGTGTCGTTCTCGTGCTTGTTGATTGTGAAATGGAAACGTAATGATAAGCAGTTACTGAAATCCCAATTGTGGGATATGAAGCCGTTCCACATAGTGTGCTTCACGGAAAAGGAAATCATCGATTCAATCAATTCTGCCAATTTGATAGGCAAAGGAGGATCTGGGAATGTGTACAAAGTTGTACTAAATAATGGCAAAGAACTTGCAGTGAAACATCTATGGCAGTCGGGCTCCAGGGACCAAACAAATTGTCGAACCAGCGCGACTATGTTAACCAAAAGAAAGACCAGGTCATCTGAATATGATGCAGAAGTGGCTACATTGAGTTCAGTGAGGCATGTCAATGTAGTGAAACTATACTGTAGCATTTCGAGCGAGGATAGTAATCTGTTGGTTTACGAGTACTTACCGAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTTGCGGTTGGAGCAGCAAGGGGACTGGAGTATTTGCATCATGGGTGTGACCGACCCGTGATTCACCGAGATGTGAAGTCGAGTAATATTTTGTTGGACAGTGATTGGAAGCCTAGGATTGCAGATTTTGGGCTAGCTAAGATCCTGCAGGATGACTGTGGGAGTGGAGATTCGTCTCATGTCATTGCTGGAACACTCGGTTATCTAGCCCCTGAATATGCATACACATGCAAGATAAACGAGAAGAGCGACGTCTACAGCTTCGGAGTAGTCTTAATGGAACTAGTAACAGGAAAGAAGCCAAATGAGCCGGAGTTTGGGGAGAACAAAGACATTGTACAGTGGGCACACAGCAGAATGAGAGACCTGAAAGGCAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAGGTGGAAGATGCAGTCAAAGTGTTGAGAATCGCACTTCGCTGCACGGCCAAGATTCCATCTACAAGGCCCTCCATGAGAATGGTAGTTCATATGCTTGAAGAGGCTGAACCTTATAACCTCATTGACATTGTTGTCAAGAAAGAATGTGAAAAGTAA 2973 44.5 MTNSPNPPPLPAPRRRPPPVALRHFLLLLLLLLCSLPISHGDELQPLLDLKAALHQNSTSSSSLVFSSWISGKDVCSNFHGIVCDSNGSVLEINLYAQNLSGVLPFDSICSLKSLEKLSFGLNSLYGKVSDGLRNCSRLKYLDLSQNSFSGEVPDLSSLGGLRFLSLNQSGFSGDFPWKSLLNLTDLEFLSLGDNSFNPTSSFPSEILELKKLHWLYLSNCSIHGEIPPGIGNLSLLENLELSQNELTGDIPSEIVNLQKLWQLELHENSLTGKLPVGFRNLTGLRKFDASSNNLEGDLMELRFLTNLESLQLFENRFSGTIPEEFGDFKELVGLSLYQNKLTGSLPQKIGSWAAFEFIDVSENFLTGPIPPDMCKQGSMTRLLMLQNNFIGGIPESYTNCKSLNRFRVNNNSLSGVVPSGIWSLPNLNIIDLSMNQFEGPVTSDIGKAKALAQLLLSNNQFSGNLPAELGEVSSLVSIHLESNQFVGPIPESLGKLKDLSSISLNDNKFSDNIPSSLGSCISLSTINLAMNSFSGHIPENLGYLPILNSLNLSNNELSGEIPISFSHLKLSSFDLSNNRLIGQVPESLAIQAFDESFMGNPGLCSESLRYLSSCSSTSRSSSHLKTLLSCTIAGILVLLVSFSCLLIVKWKRNDKQLLKSQLWDMKPFHIVCFTEKEIIDSINSANLIGKGGSGNVYKVVLNNGKELAVKHLWQSGSRDQTNCRTSATMLTKRKTRSSEYDAEVATLSSVRHVNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDDCGSGDSSHVIAGTLGYLAPEYAYTCKINEKSDVYSFGVVLMELVTGKKPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNLIDIVVKKECEK 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1752421 1756126 + Maker00004073 Lcy4g0134 629660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0134 990 Pfam Leucine rich repeat N-terminal domain 41 85 IPR013210 -
Lcy4g0134 990 SUPERFAMILY Protein kinase-like (PK-like) 664 972 IPR011009 -
Lcy4g0134 990 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Protein kinase domain 686 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0134 990 FunFam Inactive leucine-rich repeat receptor-like protein kinase 395 491 - -
Lcy4g0134 990 Gene3D Ribonuclease Inhibitor 200 356 IPR032675 -
Lcy4g0134 990 Gene3D Phosphorylase Kinase; domain 1 670 775 - -
Lcy4g0134 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 492 613 - -
Lcy4g0134 990 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 776 987 - -
Lcy4g0134 990 ProSiteProfiles Protein kinase domain profile. 683 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0134 990 FunFam Receptor-like protein kinase 7 129 379 - -
Lcy4g0134 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 475 497 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 237 258 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 138 155 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 570 589 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 Pfam Leucine Rich Repeat 307 328 IPR001611 GO:0005515(InterPro)
Lcy4g0134 990 FunFam Receptor-like protein kinase HAIKU2 666 775 - -
Lcy4g0134 990 SUPERFAMILY L domain-like 382 591 - -
Lcy4g0134 990 SMART serkin_6 683 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0134 990 Gene3D Ribonuclease Inhibitor 42 199 IPR032675 -
Lcy4g0134 990 Gene3D Ribonuclease Inhibitor 357 617 IPR032675 -
Lcy4g0134 990 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 31 974 IPR050647 -
Lcy4g0134 990 Gene3D Transferase(Phosphotransferase) domain 1 776 984 - -
Lcy4g0134 990 ProSitePatterns Protein kinases ATP-binding region signature. 689 711 IPR017441 GO:0005524(InterPro)
Lcy4g0134 990 SUPERFAMILY L domain-like 56 226 - -
Lcy4g0134 990 SUPERFAMILY L domain-like 201 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0093 Lcy-Chr13:932110 Lcy4g0134 Lcy-Chr4:1752421 2.30E-57 dispersed
Lcy4g0134 Lcy-Chr4:1752421 Lcy9g1650 Lcy-Chr9:41654795 1.61E-200 dispersed
Lcy1g0870 Lcy-Chr1:7482960 Lcy4g0134 Lcy-Chr4:1752421 1.24E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65839 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0134 - - - 0.0