Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0156 ATGCGAGGACAGTATTCTCACCCACCGAAGCCGGGTTTCGCCGGACCCGATGAGGAAAATGAACCAGTTCGCTCTTCTCTTCCCGGACTGAACGTCCCGTTAGGCGCCGCCGGAATTCGGAAGAAGGGGACCGGAGTCCGGCCATGGCTGCTTCTCGACTCTACCGGCGGGGCGCAGGTGGTTGAGGCCGGAAAACATGCGATTATGCGGCGGACCGGCCTGCCGGCGCGGGACCTCCGGATCCTCGATCCGATGCTCTCATATCCGTCTACGATTCTTGGCCGTGAGAAAGCGATTGTTATCAATTTGGAGCACATCAAAGCCATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCCGTAATCCCCTTTGTAGAGGAGCTTCAGAGGCGGGTGCTGCGGCACCATCAAGCCACTAAGGCCGCTCAGGAGGGCAATGGGGACGATTCTAATTGGAGAAATCTGTATGACTTGGAGGAGCCACGATCGAGGGCTCAAAGTCCTCGTAATTCCTATCAAGGATTTCCTCAGGCTGAAGAGGAGGAGGGGAAGGACAACGGGAAACAAAGTCTTGAAAATCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGTGAAGCAGATACATTGGAGCAAGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATAAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGATGAGTTAGAACACTTGCTAGATGATGACGACGATATGGCTGAGATGTACTTAACAGAGAAGATGGTTCAGCAACAGCTTGAGAACTCTTCCACTTCTTCAATTCCTGAGAGAGATGAAACGGACGATGAAGTTCAGCAATTAGGCAAAGATGACAGTATTCCTGCTGAAATATCATTGGAAGGTGGTGGAACTTCTGCTAACTATGAAGGCAATATGGATGCTTCCCAGGATCACTTGTTTGGTGCATCAAATGTGGGCAGGGACAGCCACGGGACTCGGACAAGTACTACCCATAGCGCTATAAGTAAACACCTTGATGTGGAGGAACTCGAGATGCTGTTGGAGGCATACTTTGTTCAAATTGATGGTACACTGAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACCGAAGATTACATCAATATAATGCTGGATGACAAACAGAACCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACGCTCGTGGTGAGCGCTTTCGTCGTGGTGGCAGGTATCTTCGGGATGAACATCCATATTGAACTGTTCGAACCGGAAAAAGCAGGCATGCCGGAGTTCCTGTGGACCGTTGGTGGTGGCGCTACGGGAACCATCATCTTGTATGTCATTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTTGAGTAG 1491 49.77 MRGQYSHPPKPGFAGPDEENEPVRSSLPGLNVPLGAAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPMLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVIPFVEELQRRVLRHHQATKAAQEGNGDDSNWRNLYDLEEPRSRAQSPRNSYQGFPQAEEEEGKDNGKQSLENREGLKVLPFEFVALEACLEAACSCLESEADTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDDDMAEMYLTEKMVQQQLENSSTSSIPERDETDDEVQQLGKDDSIPAEISLEGGGTSANYEGNMDASQDHLFGASNVGRDSHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFEPEKAGMPEFLWTVGGGATGTIILYVIAIAWCKHKRLLE 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1999049 2002838 + Maker00003913 Lcy4g0156 629682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0156 496 CDD Mrs2_Mfm1p-like 49 494 IPR039204 -
Lcy4g0156 496 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 494 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy4g0156 496 MobiDBLite consensus disorder prediction 305 320 - -
Lcy4g0156 496 FunFam Magnesium transporter MRS2-1 37 120 - -
Lcy4g0156 496 Gene3D - 37 120 - -
Lcy4g0156 496 MobiDBLite consensus disorder prediction 294 334 - -
Lcy4g0156 496 Coils Coil 212 232 - -
Lcy4g0156 496 MobiDBLite consensus disorder prediction 164 193 - -
Lcy4g0156 496 MobiDBLite consensus disorder prediction 1 25 - -
Lcy4g0156 496 Gene3D Magnesium transport protein CorA, transmembrane region 188 424 - -
Lcy4g0156 496 Pfam Magnesium transporter MRS2-like 374 419 - -
Lcy4g0156 496 Pfam Magnesium transporter MRS2-like 54 134 - -
Lcy4g0156 496 Pfam Magnesium transporter MRS2-like 201 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2154 Lcy-Chr12:42818631 Lcy4g0156 Lcy-Chr4:1999049 1.72E-70 dispersed
Lcy13g1649 Lcy-Chr13:35439573 Lcy4g0156 Lcy-Chr4:1999049 3.10E-65 dispersed
Lcy4g0156 Lcy-Chr4:1999049 Lcy6g0580 Lcy-Chr6:5498087 1.56E-64 dispersed
Lcy4g0156 Lcy-Chr4:1999049 Lcy13g0329 Lcy-Chr13:3603206 6.97E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0156 - - - 0.0