Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g0184 | ATGACCGCAGAACCATCGATCCTGACACGAGAGCTTAAACCCCAAGACCTATTCCTGATCTTTGCATCAGATGGCCTCTGGGAACAACTGACTGATGAGGCTGCTGTGGAGATAGTTTTCAAGAACCCAAGAGCTGGAATCGCAAAGAGATTAGTCAGGGCTGCCCTCCACGAGGCAGCGAGGAAACGCGAGATGAGATACGACGACATAAAGAAGATCGAAAAGGGGATCCGACGTCATTTCCACGACGACATAACTGTCATCGTCGTTTATCTCGACCACAACAGAAGCTCAACTACCACCAGCCGGGCAAAGAACGGCATCACCGGGTACACCAATGCACCTGTTGACATTTTCTCTCTTAACTCAAACTATGAGGCAGAGGACAAACTTCACTCAATGTTCTGA | 408 | 49.02 | MTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVEIVFKNPRAGIAKRLVRAALHEAARKREMRYDDIKKIEKGIRRHFHDDITVIVVYLDHNRSSTTTSRAKNGITGYTNAPVDIFSLNSNYEAEDKLHSMF | 135 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2362250 | 2365213 | + | Maker00003950 | Lcy4g0184 | 629710 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g0184 | 135 | PANTHER | PROTEIN PHOSPHATASE | 3 | 91 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lcy4g0184 | 135 | SUPERFAMILY | PP2C-like | 2 | 93 | IPR036457 | - | |
| Lcy4g0184 | 135 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 92 | IPR001932 | - | |
| Lcy4g0184 | 135 | Gene3D | - | 1 | 106 | IPR036457 | - | |
| Lcy4g0184 | 135 | Pfam | Protein phosphatase 2C | 2 | 61 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g0184 | Lcy-Chr4:2362250 | Lcy8g1268 | Lcy-Chr8:39272682 | 3.69E-39 | dispersed | |
| Lcy4g0184 | Lcy-Chr4:2362250 | Lcy5g0598 | Lcy-Chr5:6873031 | 1.18E-43 | transposed |
Pathway information