Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0192 ATGGTTTATGTTTATGGCGCACTTTTGTCTAAATTTTCGCGACTATCGCCAACCGCGAGGCAGGCGCTAGATCGCGAGGAAGCGGCAACGAAAGGATTTGAAATTCATGAAAAAGGCGGCATTTCTCCCTCCTCTTCCTCTCTATTTCACCAACTTCATTCCTTCACCAATGGATTCTCAGATTCTCCTCCCCCTCCTCCGTTTGCCTTCTCCGGCAAACTCCGCCGCAACTTCCTCTCATTCTCTCCGCCCCTCGGAATCGGATTCTTTCCGTCTCCCATGGACGCGCCGGAGTGCCTCAATCCCTCCGTCCGAACCTCGAAGAAGCGAGACGCGGAAGAGCTCTCCCCGCAACTCGCCACCGCCAACAAGAGAGCCGTGCTTGGCGAGATCACCAACTCGTTGATCTTCAGTTCCAGCCAGTGCTCGCTTTCCGATCAGGAGATGACGGACAAGGATCTCGACGAGGAGGAACTCCCTCAAGCAACGTCTGTTGATTGTTCGAACGAGTCCGGTTCTGCTTCTAGCATCTATAACCACCTTCGATCTCTGGAGATGGAATTGCACATGAAGATACTGCCCAATAATAACATTGAGAAGGCTCACAATGGTGATTCCACTCGTGTACGAGAAATTCTAGTGGATTGGTTGGTAGAGGTCGCTGAAGAATACAAGCTTGTATCGGACACCCTATATCTCACCATATCACATATTGACAGATACTTATCTTCGCATGCTGTTGATAGAAGCAAGCTACAGCTTCTTGGCGTTTGTTGCATGCTTATTGCATCAAAGTATGAAGAGATCAGCCCTCCACATGTTGAAGACTTCTGCTATATAACAGACAACACATATACCAAAGAACAGGTACTGAATATGGAGAGAGAGGTACGCAAAATCTTGACCTGTGAAGGTGCCCCCACGATAAAAAATTTTCTCAGGCAAGAATGCTTTTCAGCTATCGTAATGTTTACAAAAGTTGCTTTAGAAAATTGGAAGCAGGCTCCGGACTTGCAATTTGAGTTCTTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTACATCACCATTGTGTACAATTCTTACCATCAGTAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCGAACCAGAGAAACATCCTTGGTGTTTAGCACTGCAACGTTACTCCGGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCACGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACAAGCAATTAGAGACAAGTACAAGCAGCATAAGTTCGAGTGTGTGGCCGAGTTATGTTCTCCCTCAGAAATTCCTGCACATTATTTTGAGGACATTGATAAGCCATCCTTCAACAGGTTCTTAAGAACCTTTACTGTTTGA 1395 45.73 MVYVYGALLSKFSRLSPTARQALDREEAATKGFEIHEKGGISPSSSSLFHQLHSFTNGFSDSPPPPPFAFSGKLRRNFLSFSPPLGIGFFPSPMDAPECLNPSVRTSKKRDAEELSPQLATANKRAVLGEITNSLIFSSSQCSLSDQEMTDKDLDEEELPQATSVDCSNESGSASSIYNHLRSLEMELHMKILPNNNIEKAHNGDSTRVREILVDWLVEVAEEYKLVSDTLYLTISHIDRYLSSHAVDRSKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYTKEQVLNMEREVRKILTCEGAPTIKNFLRQECFSAIVMFTKVALENWKQAPDLQFEFLSCYLAELSLLHHHCVQFLPSVVAASAIFLSRFTIEPEKHPWCLALQRYSGYRPSELKECILAIHDLQLNRKGSSLQAIRDKYKQHKFECVAELCSPSEIPAHYFEDIDKPSFNRFLRTFTV 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2429697 2433795 + Maker00004024 Lcy4g0192 629718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0192 464 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 387 464 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy4g0192 464 Gene3D - 177 435 - -
Lcy4g0192 464 SMART Cyclin_C_2 307 439 IPR004367 -
Lcy4g0192 464 Gene3D - 190 305 - -
Lcy4g0192 464 SMART cyclin_7 215 299 IPR013763 -
Lcy4g0192 464 SMART cyclin_7 311 408 IPR013763 -
Lcy4g0192 464 Pfam Cyclin, C-terminal domain 307 438 IPR004367 -
Lcy4g0192 464 SUPERFAMILY Cyclin-like 335 440 IPR036915 -
Lcy4g0192 464 SUPERFAMILY Cyclin-like 176 302 IPR036915 -
Lcy4g0192 464 CDD CYCLIN_AtCycA-like_rpt2 307 430 - -
Lcy4g0192 464 PANTHER CYCLINS 152 427 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy4g0192 464 FunFam Cyclin A1 292 435 - -
Lcy4g0192 464 Pfam Cyclin, N-terminal domain 177 301 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0192 Lcy-Chr4:2429697 Lcy9g1815 Lcy-Chr9:43278052 3.08E-77 dispersed
Lcy13g2114 Lcy-Chr13:40077248 Lcy4g0192 Lcy-Chr4:2429697 8.98E-94 wgd
Lcy4g0192 Lcy-Chr4:2429697 Lcy9g2059 Lcy-Chr9:45380665 3.30E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0192 K06627 - csv:101213896 604.749