Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0213 ATGGGCAGCGTCGAAGGAGAAAGAACAGTAACTGGATTTGCAGCAAGAGACCCATCAGGGTTTCTCTCTCCATACACTTACGAGCTCAGAGAAACAGGGGCAGAGGACGTTTACATAAGAGTGATATGCTGCGGGCTCTGCCACACCGACATTCATCAAGTGAAAAACGACCTCGGAATGTCGAATTACCCCATGGTTCCAGGGCATGAAATTGTGGGCGAGGTGATGGAGATTGGGAAGAACGTGAAGAGATTTAGAGTGAAGGATGTGGTGGGAGTTGGATGCATCGTTGGATCTTGCAGAAGCTGCGAGCGATGTGAGAGTGACAGAGAGCAGTATTGTAATAAGAGAATATGGACTAATAATGATGTTTACAGCGACGGCAGGCCTACTCAGGGAGGCTTCGCAACCGCCATGGTCGTCCACCAAAAGTTCGTAGTAAAAGTACCAGATGGGATGGCACCGGAGCAGGCGGCCGCGCTGCTATGCGCCGGCGTGACGGTGTACAGCCCACTGAAGCACTTTGGGCTGAAGAAAAGTGGGCTGAGAGGAGGAATTTTAGGACTCGGCGGCGTTGGGCACATGGGGGTGAAGTTGGCAAAGGCATTGGGCCACCATGTCACAGTGATAAGCTCTTCGAACAAGAAGAGAGAAGAAGCTCTGGACCATCTCGGTGCCGACGAGTACCTCGTCGGCTCCGACGAGGCTCAGATGCAACAGGCCTTCGACTCCCTCGATTACATTATCGACACCATCCCGGCCTTTCACCCTCTCGAGCCTTATCTTTCTCTTCTAAAACTCGATGGCAAGTTGATCATGTTGGGCGTTGTTAATAACCCTCTACAGTTCGTCTCTCCCATGGTCATTTTAGGGAGGAAGACGATCACGGGGAGCTTCATAGGGAGCATGACGGAGACGCAAGAGATTCTGGACTTCTTCCAAGAGAAGGAGCTGAGTTCAATGGTGGAAGTGGTGAAGATGGATTACATAAACAAAGCCATTGAAAGATTGGAGAAGAATAATGTTAGATACAGGTTCGTAGTGGATGTTGAAGGAAGCAAGTTTTAA 1068 50.09 MGSVEGERTVTGFAARDPSGFLSPYTYELRETGAEDVYIRVICCGLCHTDIHQVKNDLGMSNYPMVPGHEIVGEVMEIGKNVKRFRVKDVVGVGCIVGSCRSCERCESDREQYCNKRIWTNNDVYSDGRPTQGGFATAMVVHQKFVVKVPDGMAPEQAAALLCAGVTVYSPLKHFGLKKSGLRGGILGLGGVGHMGVKLAKALGHHVTVISSSNKKREEALDHLGADEYLVGSDEAQMQQAFDSLDYIIDTIPAFHPLEPYLSLLKLDGKLIMLGVVNNPLQFVSPMVILGRKTITGSFIGSMTETQEILDFFQEKELSSMVEVVKMDYINKAIERLEKNNVRYRFVVDVEGSKF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2669396 2672133 + Maker00004085 Lcy4g0213 629739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0213 355 Gene3D - 164 320 - -
Lcy4g0213 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Lcy4g0213 355 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Lcy4g0213 355 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Lcy4g0213 355 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Lcy4g0213 355 SUPERFAMILY GroES-like 16 181 IPR011032 -
Lcy4g0213 355 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Lcy4g0213 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Lcy4g0213 355 Gene3D - 13 350 - -
Lcy4g0213 355 PANTHER ALDEHYDE REDUCTASE 9 351 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Lcy4g0213 355 Pfam Alcohol dehydrogenase GroES-like domain 34 151 IPR013154 -
Lcy4g0213 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0213 Lcy-Chr4:2669396 Lcy8g0233 Lcy-Chr8:6209097 4.90E-127 dispersed
Lcy4g0213 Lcy-Chr4:2669396 Lcy6g0498 Lcy-Chr6:4673450 3.39E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0213 K00083 - csv:101214622 617.461