Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0225 ACAAATTCCCCTGCACCGTCCGATTTCTCAATCATCGCCAACGCCAAATCGTCACCGCACGTTGAGTTGACTGGACGAGGACGACCATCTATCGGTGTTTTTCTCTGGGTAAGATTGCGTTCTCTGTGCTGGATTCTAATGGGTTCATTTCAGTATTTGCTTATTCACTCTTTGAGTGTTTCTGATTGGTGGGATCTTGACATGGTATTTCATATAATGGATCCAAAATCTACTGAGTCCCCAACATCAACTACTGTTAATACCTTGGAGACTAAACCTCCAGAAGTACACCCTCAGGCTCCTGCTGCCTCTGGAATGGATAATGTGGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCCAAAAGCTTGAAAATTTCTCAACCACAGTCAACTTCACAAGATGGCACGACTGAAAATGCTGGGAAATCAGCTTTTGCACGTTTTACTAGTGGCTTAGGCTTGAATTTATCCCCAAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAGAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAACATCATCGCTATGGGTTTCCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACGCATCACAAGGGAAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTGATAATATCCTTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTTTTTCCAACTGCCGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGAAAAGGCCTGATTTTACCAAGTCAAATTAGGTATGTCAAATATTTTGAACGTATTTTAACATACTTCAATGGAGAAAATCCTCCTGGCCGCAGGTGTGTGCTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACACACCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTATTCGCCTTACCCGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGATCGCCAAGGAGACTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACGTGGACAATACTACCAAGAAATCAGATGAAAGCTCGGGCTCGAAACCTTCTGCAGTTGATGGGAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAGTGATAAAGATGATTTTTTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAGCTGCAGGTTCAGGGGCCAAAGAGTCAGCAGTCAAGACGACGTCGAAATCTCAAACGAGCACAACTTCATCAGATGATGTTGCGAGTTTATCACACGCCACAAAGCAAGTTTCCCTGGGAGATGGCGGAGCTAAACAGACTGCTCCTGCCAGTGACCGAAAAGGCGATGGAGTCGGAAGATCTGATTCACTCTCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTACGAGAGTGAGTAA 2055 43.65 TNSPAPSDFSIIANAKSSPHVELTGRGRPSIGVFLWVRLRSLCWILMGSFQYLLIHSLSVSDWWDLDMVFHIMDPKSTESPTSTTVNTLETKPPEVHPQAPAASGMDNVARDAPSKLSPTGITSWAKSLKISQPQSTSQDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNVDNTTKKSDESSGSKPSAVDGSEVSENQNRKSGTSDKDDFFSDSESEGGSSKSKKEAAAGSGAKESAVKTTSKSQTSTTSSDDVASLSHATKQVSLGDGGAKQTAPASDRKGDGVGRSDSLSEVPNSESEFKAMAADASVFTFGDDEDYESE 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2789604 2795415 - Maker00004080 Lcy4g0225 629751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0225 684 Gene3D Protein tyrosine phosphatase superfamily 201 398 IPR029021 -
Lcy4g0225 684 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 330 369 IPR000387 GO:0016311(InterPro)
Lcy4g0225 684 MobiDBLite consensus disorder prediction 77 92 - -
Lcy4g0225 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 332 342 IPR016130 GO:0016311(InterPro)
Lcy4g0225 684 MobiDBLite consensus disorder prediction 597 625 - -
Lcy4g0225 684 Gene3D - 405 530 - -
Lcy4g0225 684 CDD PTP_PTEN 226 391 IPR045101 GO:0016791(InterPro)
Lcy4g0225 684 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 203 623 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lcy4g0225 684 MobiDBLite consensus disorder prediction 162 186 - -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 526 684 - -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 77 118 - -
Lcy4g0225 684 ProSiteProfiles Phosphatase tensin-type domain profile. 216 395 IPR029023 -
Lcy4g0225 684 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 201 398 - -
Lcy4g0225 684 SMART PTEN_C2_2 400 528 IPR014020 -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 528 561 - -
Lcy4g0225 684 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 297 350 - -
Lcy4g0225 684 ProSiteProfiles C2 tensin-type domain profile. 402 529 IPR014020 -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 562 584 - -
Lcy4g0225 684 Pfam PTEN2, C2 domain 402 529 - -
Lcy4g0225 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 229 396 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0225 K01110 - - csv:101222304 1099.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0966 Lcy-Chr1:8477718 Lcy4g0225 Lcy-Chr4:2789604 9.40E-238 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83