Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0225 ACAAATTCCCCTGCACCGTCCGATTTCTCAATCATCGCCAACGCCAAATCGTCACCGCACGTTGAGTTGACTGGACGAGGACGACCATCTATCGGTGTTTTTCTCTGGGTAAGATTGCGTTCTCTGTGCTGGATTCTAATGGGTTCATTTCAGTATTTGCTTATTCACTCTTTGAGTGTTTCTGATTGGTGGGATCTTGACATGGTATTTCATATAATGGATCCAAAATCTACTGAGTCCCCAACATCAACTACTGTTAATACCTTGGAGACTAAACCTCCAGAAGTACACCCTCAGGCTCCTGCTGCCTCTGGAATGGATAATGTGGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCCAAAAGCTTGAAAATTTCTCAACCACAGTCAACTTCACAAGATGGCACGACTGAAAATGCTGGGAAATCAGCTTTTGCACGTTTTACTAGTGGCTTAGGCTTGAATTTATCCCCAAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAGAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAACATCATCGCTATGGGTTTCCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACGCATCACAAGGGAAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTGATAATATCCTTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTTTTTCCAACTGCCGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGAAAAGGCCTGATTTTACCAAGTCAAATTAGGTATGTCAAATATTTTGAACGTATTTTAACATACTTCAATGGAGAAAATCCTCCTGGCCGCAGGTGTGTGCTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACACACCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTATTCGCCTTACCCGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGATCGCCAAGGAGACTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACGTGGACAATACTACCAAGAAATCAGATGAAAGCTCGGGCTCGAAACCTTCTGCAGTTGATGGGAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAGTGATAAAGATGATTTTTTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAGCTGCAGGTTCAGGGGCCAAAGAGTCAGCAGTCAAGACGACGTCGAAATCTCAAACGAGCACAACTTCATCAGATGATGTTGCGAGTTTATCACACGCCACAAAGCAAGTTTCCCTGGGAGATGGCGGAGCTAAACAGACTGCTCCTGCCAGTGACCGAAAAGGCGATGGAGTCGGAAGATCTGATTCACTCTCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTACGAGAGTGAGTAA 2055 43.65 TNSPAPSDFSIIANAKSSPHVELTGRGRPSIGVFLWVRLRSLCWILMGSFQYLLIHSLSVSDWWDLDMVFHIMDPKSTESPTSTTVNTLETKPPEVHPQAPAASGMDNVARDAPSKLSPTGITSWAKSLKISQPQSTSQDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNVDNTTKKSDESSGSKPSAVDGSEVSENQNRKSGTSDKDDFFSDSESEGGSSKSKKEAAAGSGAKESAVKTTSKSQTSTTSSDDVASLSHATKQVSLGDGGAKQTAPASDRKGDGVGRSDSLSEVPNSESEFKAMAADASVFTFGDDEDYESE 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2789604 2795415 - Maker00004080 Lcy4g0225 629751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0225 684 Gene3D Protein tyrosine phosphatase superfamily 201 398 IPR029021 -
Lcy4g0225 684 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 330 369 IPR000387 GO:0016311(InterPro)
Lcy4g0225 684 MobiDBLite consensus disorder prediction 77 92 - -
Lcy4g0225 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 332 342 IPR016130 GO:0016311(InterPro)
Lcy4g0225 684 MobiDBLite consensus disorder prediction 597 625 - -
Lcy4g0225 684 Gene3D - 405 530 - -
Lcy4g0225 684 CDD PTP_PTEN 226 391 IPR045101 GO:0016791(InterPro)
Lcy4g0225 684 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 203 623 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lcy4g0225 684 MobiDBLite consensus disorder prediction 162 186 - -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 526 684 - -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 77 118 - -
Lcy4g0225 684 ProSiteProfiles Phosphatase tensin-type domain profile. 216 395 IPR029023 -
Lcy4g0225 684 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 201 398 - -
Lcy4g0225 684 SMART PTEN_C2_2 400 528 IPR014020 -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 528 561 - -
Lcy4g0225 684 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 297 350 - -
Lcy4g0225 684 ProSiteProfiles C2 tensin-type domain profile. 402 529 IPR014020 -
Lcy4g0225 684 MobiDBLite consensus disorder prediction 562 584 - -
Lcy4g0225 684 Pfam PTEN2, C2 domain 402 529 - -
Lcy4g0225 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 229 396 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0966 Lcy-Chr1:8477718 Lcy4g0225 Lcy-Chr4:2789604 9.40E-238 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0225 K01110 - csv:101222304 1099.73