Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0231 ATGGAACTGATAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTTGCAGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTTGCAAAGGCTGGTCTTGTAACAACTCTTAGTACTAGAACGATAGTATTTGGTGCAACAAATCCTAAAGGACACTACGACCCTGAACAACATACAAAAAATCCCGAATGGGATGCGGTTGTTTCATCTCATATTCTCTCTGAGTGCGATCAAGAGAAGGGAAAGCGTAACAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATTCAATTCGTGAAAGGATACTTCAGACCAGTCCTGACGAAGGAGGCTGAGAAAATTATTTCAAACTATTATCAACTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACAGTACGCATGCTTGAAAGTTTGATACGCCTAGCACAAGCACATGCTCGGCTTATGTTTAGAAATGAGGTTACCCGGCTTGATGCCATTACAGCTATTTTGTGCGTCGAATCATCCATGACGACCTCAGCTCTTGTGGATAGTGTCGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAACAAGAAATTTTGATCCTCGAGAAGCTTAAGTCGATGGACGACGTTTCTGACATTGGCAGTTGA 738 43.36 MELIGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQHTKNPEWDAVVSSHILSECDQEKGKRNNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEKIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKSMDDVSDIGS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2853900 2861092 - Maker00004105 Lcy4g0231 629757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0231 245 Gene3D - 80 203 IPR027417 -
Lcy4g0231 245 ProSiteProfiles MCM family domain profile. 1 70 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0231 245 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 80 228 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Lcy4g0231 245 Pfam MCM P-loop domain 5 81 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0231 245 Gene3D - 2 79 IPR027417 -
Lcy4g0231 245 SMART mcm 1 199 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0231 245 PRINTS Mini-chromosome maintenance (MCM) protein family signature 12 26 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0231 245 PRINTS Mini-chromosome maintenance (MCM) protein family signature 40 53 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0231 245 PRINTS Mini-chromosome maintenance (MCM) protein family signature 63 75 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0231 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 203 IPR027417 -
Lcy4g0231 245 Pfam MCM AAA-lid domain 116 197 IPR041562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0231 Lcy-Chr4:2853900 Lcy4g2051 Lcy-Chr4:47083917 7.92E-26 dispersed
Lcy4g0231 Lcy-Chr4:2853900 Lcy11g0915 Lcy-Chr11:27405421 1.67E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0231 K10738 - csv:101205171 428.713