Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0233 ATGGACAACTCCTTGGCGGCAATGGATGATTCTCCTACCAATCCCGTCAAGGCCTTGGCTACCTTTCTAATTCGCCGCCACTCCGATCAGCTCCGTTCCATTGCTCATTCCCCTGATCCAAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCATCCGACCGAGTATTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCACAAGATCATTTTGGGTGATTCGAAAGGTTGCATGAATGGAATTAGGAAAGATTTCATCCATGTTCGTATTAATGTCACTGGCTCCCCGCTGGAATGGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGGTCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATGTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTTGAAACTAGAAACTCAATACAGTTACCATCATTTTGCCCCTCTCAGAGGGCAAAACTATGTGAAGGTAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGGAGTATTAAGTGCGAAGTGGTCTCCAGACCTCAAAGATGTACGGTGTGACCTTGATCCTATGCTAATTGCTAATCATGTGAGGAGAACCAATGAACTAAAGACCGAGGTTGACATCGCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGGAATGCAATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCTGGAATAGAAAATCATAAGAAGCTGCAGATTTGA 1101 44.41 MDNSLAAMDDSPTNPVKALATFLIRRHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKIILGDSKGCMNGIRKDFIHVRINVTGSPLEWPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFPVYPELETRNSIQLPSFCPSQRAKLCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKTEVDIADDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGIENHKKLQI 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2879184 2890949 - Maker00003924 Lcy4g0233 629759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0233 366 Pfam MCM OB domain 124 244 IPR033762 -
Lcy4g0233 366 Gene3D - 280 365 IPR027417 -
Lcy4g0233 366 ProSiteProfiles MCM family domain profile. 304 366 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0233 366 SMART mcm 118 366 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0233 366 Pfam MCM P-loop domain 306 361 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g0233 366 SUPERFAMILY Nucleic acid-binding proteins 43 253 IPR012340 -
Lcy4g0233 366 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 14 358 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Lcy4g0233 366 Gene3D - 149 205 - -
Lcy4g0233 366 Gene3D - 124 244 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0233 Lcy-Chr4:2879184 Lcy5g0260 Lcy-Chr5:2459963 1.02E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0233 K10738 - csv:101205171 666.381