Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0233 | ATGGACAACTCCTTGGCGGCAATGGATGATTCTCCTACCAATCCCGTCAAGGCCTTGGCTACCTTTCTAATTCGCCGCCACTCCGATCAGCTCCGTTCCATTGCTCATTCCCCTGATCCAAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCATCCGACCGAGTATTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCACAAGATCATTTTGGGTGATTCGAAAGGTTGCATGAATGGAATTAGGAAAGATTTCATCCATGTTCGTATTAATGTCACTGGCTCCCCGCTGGAATGGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGGTCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATGTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTTGAAACTAGAAACTCAATACAGTTACCATCATTTTGCCCCTCTCAGAGGGCAAAACTATGTGAAGGTAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGGAGTATTAAGTGCGAAGTGGTCTCCAGACCTCAAAGATGTACGGTGTGACCTTGATCCTATGCTAATTGCTAATCATGTGAGGAGAACCAATGAACTAAAGACCGAGGTTGACATCGCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGGAATGCAATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCTGGAATAGAAAATCATAAGAAGCTGCAGATTTGA | 1101 | 44.41 | MDNSLAAMDDSPTNPVKALATFLIRRHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKIILGDSKGCMNGIRKDFIHVRINVTGSPLEWPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFPVYPELETRNSIQLPSFCPSQRAKLCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKTEVDIADDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGIENHKKLQI | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2879184 | 2890949 | - | Maker00003924 | Lcy4g0233 | 629759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0233 | 366 | Pfam | MCM OB domain | 124 | 244 | IPR033762 | - | |
Lcy4g0233 | 366 | Gene3D | - | 280 | 365 | IPR027417 | - | |
Lcy4g0233 | 366 | ProSiteProfiles | MCM family domain profile. | 304 | 366 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Lcy4g0233 | 366 | SMART | mcm | 118 | 366 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Lcy4g0233 | 366 | Pfam | MCM P-loop domain | 306 | 361 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Lcy4g0233 | 366 | SUPERFAMILY | Nucleic acid-binding proteins | 43 | 253 | IPR012340 | - | |
Lcy4g0233 | 366 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 14 | 358 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
Lcy4g0233 | 366 | Gene3D | - | 149 | 205 | - | - | |
Lcy4g0233 | 366 | Gene3D | - | 124 | 244 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0233 | Lcy-Chr4:2879184 | Lcy5g0260 | Lcy-Chr5:2459963 | 1.02E-15 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g0233 | K10738 | - | csv:101205171 | 666.381 |