Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0262 ATGCTCATTTTGGTCCTATATGCGGCGGCGGTGCTTGGCTTCGCCGCCGCCGCGGTGCATGGCGAAGGCACACGCTTCGGCTTCTACCGCGCCACGTGCCCTCAAGTCGAATCCATCGTTAGATCCATTGTTCGATCTCATTTCGAATTGGATCCAACGGTGGCTCCTGGGTTATTGAGAATGCACTCCCATGACTGCTTTGTTCGAGGATGTGATGCTTCTGTGCTCATTGCTGGCCCCGATACCGAGAGGACGGCTGTGCCCAACCTTACTTTGAAAGGGTTTGAAGTGATCGACGATGCCAAGTCGCAACTCGAAGATGCTTGTCCTGGTGTTGTGTCCTGCGCTGATATCCTTGCTCTTGCTGCTCGTGACTCGGTGGTTTTGACAGGTGGATTAGGTTGGGAAGTCCCGACGGGACGAAGAGATGGGAGAGTTTCGTTAGTTTCAGAGGTGACATTGCCTAGTTTTAAAGATTCCATCGAAGTTCAGAAGGAGAAGTTCAACGCTAATGGTCTCAACACCCATGACCTTGTCACTCTCGCAGGTGCTCATACGATCGGTACAGCATCATGTCGTTTTTTCAGTTACAGACTCTACAACTTCACCACGGCGACCGAAAGCGGCGCCGATCCGACCATCAACCCGTCACTCGTCGGTCGACTACGAGCACTTTGCCCTCAAGACGGAGACGGTTCCGACAGGGTCGAACTCGACATAGGTAGTCCGGAACAATTTGACGTGTCGTTCTACTCAAACTTGAGGCATGGGGGTGGGATCTTGGAGTCTGATCAAATGCTGTGGAGTGATGACTCTACTCGCCCTATCGTTCGGCACTACTTGGGTTTGAGAAGTTTAATGGGACGTTCCAGCTTCAGAGTTGAGTTTGGGAGATCCATGCTTAAAATGAGCAACATTGGAGTCAAAACTGGCACTCAGGGTGAAATCCGTAGGCTCTGCTCCCAAGTTAATTAA 975 51.49 MLILVLYAAAVLGFAAAAVHGEGTRFGFYRATCPQVESIVRSIVRSHFELDPTVAPGLLRMHSHDCFVRGCDASVLIAGPDTERTAVPNLTLKGFEVIDDAKSQLEDACPGVVSCADILALAARDSVVLTGGLGWEVPTGRRDGRVSLVSEVTLPSFKDSIEVQKEKFNANGLNTHDLVTLAGAHTIGTASCRFFSYRLYNFTTATESGADPTINPSLVGRLRALCPQDGDGSDRVELDIGSPEQFDVSFYSNLRHGGGILESDQMLWSDDSTRPIVRHYLGLRSLMGRSSFRVEFGRSMLKMSNIGVKTGTQGEIRRLCSQVN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3167322 3168798 + Maker00006112 Lcy4g0262 629788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0262 324 FunFam Peroxidase 27 171 - -
Lcy4g0262 324 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PANTHER PEROXIDASE 25-RELATED 15 320 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 ProSiteProfiles Plant heme peroxidase family profile. 23 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 FunFam Peroxidase 155 303 - -
Lcy4g0262 324 Gene3D Peroxidase, domain 2 155 303 - -
Lcy4g0262 324 Gene3D - 27 324 - -
Lcy4g0262 324 CDD secretory_peroxidase 25 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy4g0262 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Lcy4g0262 324 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0262 324 Pfam Peroxidase 40 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0262 Lcy-Chr4:3167322 Lcy4g0279 Lcy-Chr4:3425158 1.92E-95 dispersed
Lcy4g0262 Lcy-Chr4:3167322 Lcy4g0263 Lcy-Chr4:3176377 1.05E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0262 K00430 - csv:101202985 531.176