Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0263 ATGGCGGAACTTGGTTATAGGCCAATGCTCGTTCTCGCTATGTCTGTGGCCGTGCTACTCGGTTTCACTGCGACCGTCGTGCATGGCCAAGGCACACGCATTGGCTTCTACTCTAGTTCTTGTCCTCGAGCTGAGTCCATCGTTAGGTCTACCGTACAGTCTCATTTTCGATCCGACCCCACAGTCGCTCCCGGATTGCTGAGAATGCACTTCCACGACTGCTTCGTTCGAGGCTGTGATGCCTCCGTACTTCTTGCTGGCTCCGATACCGAGAGGACTGCGCCGCCCAACCTTTCCTTGAAAGGGTTCGAGGTGATCGACGATGCCAAGTCGCAGCTCGAAACTGCTTGTCCTGGCGTTGTGTCCTGCGCTGACATTCTCGCCCTCGCTGCTCGTGACTCAGTAGTTTTGACAAGTGGAGTGAGTTGGGGAGTGCCCACAGGACGAAGAGATGGGACAGTCTCAGTGGCCTCAGAAGCTAACAACTTACCTGGATTTACCGACTCAATAGACGTTCAAAAGCAAAAGTTCAGCGACAAGGGTCTCAACACTCAAGACCTCGTCACTCTCGTCGCAAACGGTGCGGATCCGAGCATCGACCCAGCATTCGTGAGTCAGTTGCAAGCGCTTTGCCCTCAGAATGGAGACGGCAGCCGCGAGGTTGGGCTGGACACGGGCAGCCCCGGCAGGTTCGACACGTCCTTCTTCTCAAACTTGAGGAACGGGCGTGGGATCTTGGAGTCCGATCAAAAGCTGTGGACCGATGCCTCCACTCGCACGTTCGTCCAACGCTTCTTGGGTTTGAGGGGCTTATTGGGCTTGACTTTCAGCGTCGAGTTCGGGAAATCCATGGTTAAGATGAGCAACATTGAACTCAAGACTGGTACTCAGGGAGAAATTCGTAAAGTTTGCTCTGCAGTTAACTGA 927 54.26 MAELGYRPMLVLAMSVAVLLGFTATVVHGQGTRIGFYSSSCPRAESIVRSTVQSHFRSDPTVAPGLLRMHFHDCFVRGCDASVLLAGSDTERTAPPNLSLKGFEVIDDAKSQLETACPGVVSCADILALAARDSVVLTSGVSWGVPTGRRDGTVSVASEANNLPGFTDSIDVQKQKFSDKGLNTQDLVTLVANGADPSIDPAFVSQLQALCPQNGDGSREVGLDTGSPGRFDTSFFSNLRNGRGILESDQKLWTDASTRTFVQRFLGLRGLLGLTFSVEFGKSMVKMSNIELKTGTQGEIRKVCSAVN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3176377 3177757 - Maker00006240 Lcy4g0263 629789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0263 308 Gene3D Peroxidase, domain 2 164 191 - -
Lcy4g0263 308 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 222 237 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 238 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 282 295 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 PRINTS Haem peroxidase superfamily signature 224 239 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 Pfam Peroxidase 48 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 Gene3D Peroxidase, domain 2 194 287 - -
Lcy4g0263 308 Gene3D - 37 163 - -
Lcy4g0263 308 FunFam Peroxidase 35 178 - -
Lcy4g0263 308 CDD secretory_peroxidase 33 307 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy4g0263 308 ProSiteProfiles Plant heme peroxidase family profile. 31 308 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Lcy4g0263 308 SUPERFAMILY Heme-dependent peroxidases 33 308 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0263 308 Gene3D - 288 308 - -
Lcy4g0263 308 PANTHER PEROXIDASE 25-RELATED 20 304 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0263 Lcy-Chr4:3176377 Lcy4g0279 Lcy-Chr4:3425158 2.31E-84 dispersed
Lcy9g1912 Lcy-Chr9:44122367 Lcy4g0263 Lcy-Chr4:3176377 9.79E-39 dispersed
Lcy4g0262 Lcy-Chr4:3167322 Lcy4g0263 Lcy-Chr4:3176377 1.05E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0263 K00430 - csv:101217567 484.567