Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0268 ATGAGCGGACGAACGGTAGGCGACGAGGGCATGGGGCAATCGGGGCGGCTGAGTGAGACGTCGACCGTGGCAATGCCCTTGAAGGTGGGCGTGCCGCCGAGGAAGAATGCGTGGGAGGAATTTAAATCAGTGGTGAATGAGACGTTGTTCCCTGATCAGCCTCTTCGCCGTTTCAAAGACAAGCCCAAACATAAGAAGTTTGCTCTGTTTGTCCAAAGCATCTTCCCCATATTCCAATGGGGAAGGGAGTACAGCTTGGTTAAGTTTAAAGGTGACCTCATCGCTGGCTTCACTATTGCCAGTCTTTGCATACCTCAAGACATTGGATATGCCAAGCTCGCCTATTTGCCTGCACAAAATGGACTATATAGTAGCTTCGTCCCACCATTAGTGTACGCGGTGATGGGGAGCTCGAGGGATATCGCGATCGGCCCTGTCGCTGTCGTGTCTCTTCTGCTCGGAACGCTATTGCAGCAGGAGTACGACCCGGTGAAAGAAGCAGAGGATTACAAACGACTAGCTTTCACGGCGACTTTCTTTGCCGGAGTAACTCAGTTGGCTCTAGGTTTCCTCCGACTCGGATTCTTGATTGACTTTCTGTCGCACGCCGCCATTGTTGGGTTCATGGGCGGCGCGGCCGTGACCATCGCCCTTCAGCAGCTGAAGGGTCTCCTTGGCATATCAAACTTCACCAAAAAAACTGATATCATTTCTGTGATGCGCTCTGTTTGGAGTAATGTGCACCATGGGGGCAAGAAAAATAAGAAACTCTTTTGGATACCCGCCATCGCACCCTTAACATCAGTTATACTCTCGACATTTTTTGTTTACATCACTCGCTCAGATAAACAGGGTGTTCAGATTGTTAGAAACATAAAGCAAGGAATAAATCCTCCATCCCTTGATCAAATATTCTTCCATGGAGACAATCTCACCAAAGGTTTCAAGATTGGAGTGGTTGCTGGCTTGATTGCCCTCACGGAAGCTGTGGCCATTGCAAGAACATTTGCAGACCTAAAGGACTACGAGATCGATGGGAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCTTTCTCACGGTCAGCCGTAAACTACATGGCTGGCTGCAACACACCGGTGTCAAACATCGTCATGGCCTGCGTCGTTCTCCTTACCTTAGAGGTCATCACACCCCTTTTCAAGTACACCCCTAATGCCATTCTTGCCTCCATCATCATCTGCGCCGTGATCGGTCTCATCGACATCGACGCCGTGCTTTTGTTATGGAAGATCGACAAATTCGACTTCATCGCCTGCATGGGAGCGTTCTTCGGCGTCGTCTTTGATTCCGTCGAGATTGGCCTTCTCATTGCTGTTAGTCTGTCGCTATTCAAAATTCTGTTGCAAGTGACAAGACCGCGCATTGCGTTGCTTGGGAAGCTTCCAAAGATTGCCATTTTTAGAAACATTTTGCAGTACCCTGGAGCAAGGAGGATTGAAGGAGTTCTAATGGTCAGGGTTGATTCTTCAATATACTTCTCCAACGCCAACTATGTCAAAGAAAGGATACTGAGATGGCTGGCAGATGAAACAGAGAAGCTAGACGATCAATCTCTGCCGATCAAAGTCGTCGTCGTCGACATGTCTCCCGTATCCGATATCGACACGAGCGGCATCCACGCCTTGGAGGGATTGCACACTCATTTGCAGAAGAAGGAAATTGAACTTGCACTTGCAAATCCTGGTCCAGTGATTATGGAGAAGCTCTTAGCTGCAAAGTTTGATCAGTTCATTGGAGAAGACAACATCTTCCTTAGTGTCAACGAAGCTATTAAGATTTATGCCCCAAATTCTGCTCTTGATCCTTAA 1890 48.2 MSGRTVGDEGMGQSGRLSETSTVAMPLKVGVPPRKNAWEEFKSVVNETLFPDQPLRRFKDKPKHKKFALFVQSIFPIFQWGREYSLVKFKGDLIAGFTIASLCIPQDIGYAKLAYLPAQNGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLQQEYDPVKEAEDYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLLGISNFTKKTDIISVMRSVWSNVHHGGKKNKKLFWIPAIAPLTSVILSTFFVYITRSDKQGVQIVRNIKQGINPPSLDQIFFHGDNLTKGFKIGVVAGLIALTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPVSNIVMACVVLLTLEVITPLFKYTPNAILASIIICAVIGLIDIDAVLLLWKIDKFDFIACMGAFFGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIAIFRNILQYPGARRIEGVLMVRVDSSIYFSNANYVKERILRWLADETEKLDDQSLPIKVVVVDMSPVSDIDTSGIHALEGLHTHLQKKEIELALANPGPVIMEKLLAAKFDQFIGEDNIFLSVNEAIKIYAPNSALDP 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3241751 3246866 - Maker00006216 Lcy4g0268 629794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0268 629 FunFam Sulfate transporter 31 479 624 - -
Lcy4g0268 629 Pfam STAS domain 501 617 IPR002645 -
Lcy4g0268 629 ProSiteProfiles STAS domain profile. 499 621 IPR002645 -
Lcy4g0268 629 SUPERFAMILY SpoIIaa-like 503 620 IPR036513 -
Lcy4g0268 629 PANTHER SULFATE TRANSPORTER 62 619 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g0268 629 Gene3D STAS domain 494 624 IPR036513 -
Lcy4g0268 629 NCBIfam sulfate permease 251 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g0268 629 CDD STAS_SulP_like_sulfate_transporter 500 614 - -
Lcy4g0268 629 Pfam Sulfate permease family 251 448 IPR011547 GO:0016020(InterPro)
Lcy4g0268 629 Pfam Sulfate permease family 89 249 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1169 Lcy-Chr10:34229942 Lcy4g0268 Lcy-Chr4:3241751 1.25E-188 dispersed
Lcy3g2098 Lcy-Chr3:48012647 Lcy4g0268 Lcy-Chr4:3241751 1.03E-206 dispersed
Lcy4g0268 Lcy-Chr4:3241751 Lcy9g1604 Lcy-Chr9:41227016 1.10E-274 dispersed
Lcy4g0267 Lcy-Chr4:3217940 Lcy4g0268 Lcy-Chr4:3241751 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0268 K17470 - csv:101202746 1078.54