Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0273 ATGTCATTTACACTTTTCTTGATCTCTTCCACCGAAGTTTCAACCAACTGCAAGCGTCAATCGAAAGTTCTCTGCATATTAGAAGCTTCTGCCTCCATGAGAGAAAGAAAATCCAATTTTCTTGAACGCCTGGGATCTGGACGCTTTGATACCAACTTGATGATGTACTCAAGTGATGGTGCTAATGGAGTTATTGTTGGAGCAATTGTTGCCGCTGCTGCTTTGCTGATTGTTGTGCCTGCTATTGCATTTACTCTTTGGCGACGAAAAAATCGACCAGATCATTTCTTTGATGTACCTGCCGAAGAAGATCCAGAAGTTAACCTTGGGCAGCTCAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGACTGAAAGAGGAGCGTGCCGAGGGTGGGGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTGCTTCGTCTAAATGGGTTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCCTATATGGCTAATGGAAGTTTAGCATCATGTTTAAGAGAGCGTAAACAATGCCAACCGCCACTCAACTGGGCAATACGTAAACGAGTTGCTTTGGGGGCTGCACGGGGACTTGAATATTTGCATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTCATGAACTACAAGGATACTCATGTTACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCTGAGTACCTCTCATCTGGAAAGTCTTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTTGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGCTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTAAGTGATAAGAAACTGGAAACATTGGTCGACTCCGATCTTCGGGGCAATTACGTAGAGGAAGAACTGGAGCAGCTAATTCAAGTTGCACTACTTTGCACACAAAGCTCCCCTGTGGAGAGACCTAAGATGTCAGAGGTGTTGCAAATGCTGGAAGGCGATGGTTTGGCTGAAAGATGGGAGGAATGGCAGAAAGAAGAGAACTCACGCCAAAACTTCGACATTATGGTCCATTTTTACCACCAGAGTACAACTCCCCAGGTTTTTGATTCCACCTCTCGTGTTGATCCTGATGTGTTGTCTGGTCCAAGATGA 1365 43.3 MSFTLFLISSTEVSTNCKRQSKVLCILEASASMRERKSNFLERLGSGRFDTNLMMYSSDGANGVIVGAIVAAAALLIVVPAIAFTLWRRKNRPDHFFDVPAEEDPEVNLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEGGELQFQTEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQCQPPLNWAIRKRVALGAARGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWVKGLLSDKKLETLVDSDLRGNYVEEELEQLIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEENSRQNFDIMVHFYHQSTTPQVFDSTSRVDPDVLSGPR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3334661 3346063 + Maker00006320 Lcy4g0273 629799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0273 454 ProSiteProfiles Protein kinase domain profile. 127 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0273 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g0273 454 FunFam Somatic embryogenesis receptor-like kinase 1 204 421 - -
Lcy4g0273 454 Gene3D Transferase(Phosphotransferase) domain 1 204 421 - -
Lcy4g0273 454 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 50 436 - -
Lcy4g0273 454 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524(InterPro)
Lcy4g0273 454 Gene3D Phosphorylase Kinase; domain 1 96 203 - -
Lcy4g0273 454 SMART serkin_6 127 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g0273 454 SUPERFAMILY Protein kinase-like (PK-like) 108 402 IPR011009 -
Lcy4g0273 454 FunFam Somatic embryogenesis receptor kinase 1 96 203 - -
Lcy4g0273 454 Pfam Protein tyrosine and serine/threonine kinase 129 401 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0273 Lcy-Chr4:3334661 Lcy9g0626 Lcy-Chr9:20737737 2.11E-215 dispersed
Lcy4g0273 Lcy-Chr4:3334661 Lcy6g1102 Lcy-Chr6:12375843 4.06E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65841 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0273 K13416 - csv:101216386 674.085