Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g0273 | ATGTCATTTACACTTTTCTTGATCTCTTCCACCGAAGTTTCAACCAACTGCAAGCGTCAATCGAAAGTTCTCTGCATATTAGAAGCTTCTGCCTCCATGAGAGAAAGAAAATCCAATTTTCTTGAACGCCTGGGATCTGGACGCTTTGATACCAACTTGATGATGTACTCAAGTGATGGTGCTAATGGAGTTATTGTTGGAGCAATTGTTGCCGCTGCTGCTTTGCTGATTGTTGTGCCTGCTATTGCATTTACTCTTTGGCGACGAAAAAATCGACCAGATCATTTCTTTGATGTACCTGCCGAAGAAGATCCAGAAGTTAACCTTGGGCAGCTCAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGACTGAAAGAGGAGCGTGCCGAGGGTGGGGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTGCTTCGTCTAAATGGGTTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCCTATATGGCTAATGGAAGTTTAGCATCATGTTTAAGAGAGCGTAAACAATGCCAACCGCCACTCAACTGGGCAATACGTAAACGAGTTGCTTTGGGGGCTGCACGGGGACTTGAATATTTGCATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTCATGAACTACAAGGATACTCATGTTACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCTGAGTACCTCTCATCTGGAAAGTCTTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTTGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGCTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTAAGTGATAAGAAACTGGAAACATTGGTCGACTCCGATCTTCGGGGCAATTACGTAGAGGAAGAACTGGAGCAGCTAATTCAAGTTGCACTACTTTGCACACAAAGCTCCCCTGTGGAGAGACCTAAGATGTCAGAGGTGTTGCAAATGCTGGAAGGCGATGGTTTGGCTGAAAGATGGGAGGAATGGCAGAAAGAAGAGAACTCACGCCAAAACTTCGACATTATGGTCCATTTTTACCACCAGAGTACAACTCCCCAGGTTTTTGATTCCACCTCTCGTGTTGATCCTGATGTGTTGTCTGGTCCAAGATGA | 1365 | 43.3 | MSFTLFLISSTEVSTNCKRQSKVLCILEASASMRERKSNFLERLGSGRFDTNLMMYSSDGANGVIVGAIVAAAALLIVVPAIAFTLWRRKNRPDHFFDVPAEEDPEVNLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEGGELQFQTEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQCQPPLNWAIRKRVALGAARGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWVKGLLSDKKLETLVDSDLRGNYVEEELEQLIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEENSRQNFDIMVHFYHQSTTPQVFDSTSRVDPDVLSGPR | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3334661 | 3346063 | + | Maker00006320 | Lcy4g0273 | 629799 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g0273 | 454 | ProSiteProfiles | Protein kinase domain profile. | 127 | 414 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy4g0273 | 454 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 250 | 262 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy4g0273 | 454 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 204 | 421 | - | - | |
Lcy4g0273 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 421 | - | - | |
Lcy4g0273 | 454 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 50 | 436 | - | - | |
Lcy4g0273 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 133 | 155 | IPR017441 | GO:0005524(InterPro) | |
Lcy4g0273 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 203 | - | - | |
Lcy4g0273 | 454 | SMART | serkin_6 | 127 | 401 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy4g0273 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 108 | 402 | IPR011009 | - | |
Lcy4g0273 | 454 | FunFam | Somatic embryogenesis receptor kinase 1 | 96 | 203 | - | - | |
Lcy4g0273 | 454 | Pfam | Protein tyrosine and serine/threonine kinase | 129 | 401 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0273 | Lcy-Chr4:3334661 | Lcy9g0626 | Lcy-Chr9:20737737 | 2.11E-215 | dispersed | |
Lcy4g0273 | Lcy-Chr4:3334661 | Lcy6g1102 | Lcy-Chr6:12375843 | 4.06E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65841 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g0273 | K13416 | - | csv:101216386 | 674.085 |