Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g0279 ATGACGAAATTCATGATGATTCTCAATCTCTTGCTGTTCCTCAGTTGCTTTGTAGCCATTTCTCAAGCGCAACTGAAGTTTGGATTCTATGCTCGAACTTGTCCTTCTGCCGAATCCGTCGTTCGCTCCGTCGTCAACGACGCCGTTCGCAACAATGCCAACATGGCCGCCGTGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCGAGGGTTGCGACGGTTCGATCTTGATCGACGGTCCGAATGCCGAGAAACACGCTTTTGGGCATCAAGGGGTGGGGGGGTTCGAGGTAATAGAGAGGGCAAAGGGAGCATTGGAAGCACGATGTCCTGGGGTGGTTTCTTGTGCTGACATCGTCACTATGGCTGCAAGAGACGCTGTCGTTATGGCAAATGGACCGGAGTACGAGGTTCTCACCGGTCGGAGAGACGGTCGGGTTTCCGACGTTTCTCTGGCGGATGAGCTGCCGGATGTGAGTGATTCAGTTCAAGTTTTGAAGAACAAATTTGGACAGAAAGGGATGACTGACAAAGACTTGGTTTTACTGAGTGCGGCACACACAATCGGAACGACTGCATGTTTCTTCATGACAAAACGCCTCTACGACTTCTTCCCGGGCGGCGGATCGGACCCGGACATAAGCCCGACGCTGCTGCCGGAGCTGAAGTCGCAATGCCCTCGAAACGGCGACGTCAACGTTCGCCTCGGCATCGACCACGGCAGCCCCCGCACCTTCGACGTTCACATTCTCCAAAACATAAGAGATGGCTTCGCCGTGCTCGCCTCTGACGCGCGCCTAAACGACGACGCATCGACCCGAGCAGTGATCGACTCGTACTTCAGCCCCCTGGCCCCCATTCTTGGCCCTTCATTTCAGGAGGATTTTGTGAATTCCATGGTTAGAATGGGACAGATTGGGACCAAAACTGGCTCACAAGGAGAGATTAGAAGGGTATGTTCTGCTTTTAACTGA 975 53.85 MTKFMMILNLLLFLSCFVAISQAQLKFGFYARTCPSAESVVRSVVNDAVRNNANMAAVLLRLHFHDCFVEGCDGSILIDGPNAEKHAFGHQGVGGFEVIERAKGALEARCPGVVSCADIVTMAARDAVVMANGPEYEVLTGRRDGRVSDVSLADELPDVSDSVQVLKNKFGQKGMTDKDLVLLSAAHTIGTTACFFMTKRLYDFFPGGGSDPDISPTLLPELKSQCPRNGDVNVRLGIDHGSPRTFDVHILQNIRDGFAVLASDARLNDDASTRAVIDSYFSPLAPILGPSFQEDFVNSMVRMGQIGTKTGSQGEIRRVCSAFN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3425158 3429772 - Maker00006262 Lcy4g0279 629805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g0279 324 FunFam Peroxidase 28 176 - -
Lcy4g0279 324 Gene3D Peroxidase, domain 2 157 303 - -
Lcy4g0279 324 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy4g0279 324 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Lcy4g0279 324 Gene3D - 28 324 - -
Lcy4g0279 324 PANTHER PEROXIDASE 25-RELATED 19 320 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy4g0279 324 SUPERFAMILY Heme-dependent peroxidases 24 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Lcy4g0279 324 FunFam Peroxidase 157 303 - -
Lcy4g0279 324 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 Pfam Peroxidase 41 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy4g0279 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0262 Lcy-Chr4:3167322 Lcy4g0279 Lcy-Chr4:3425158 1.92E-95 dispersed
Lcy4g0263 Lcy-Chr4:3176377 Lcy4g0279 Lcy-Chr4:3425158 2.31E-84 dispersed
Lcy4g0279 Lcy-Chr4:3425158 Lcy8g1701 Lcy-Chr8:43574041 2.39E-71 dispersed
Lcy4g0279 Lcy-Chr4:3425158 Lcy4g0570 Lcy-Chr4:6967612 5.06E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g0279 K00430 - csv:101221831 525.398